Pairwise Alignments

Query, 504 a.a., Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system from Sphingobium sp. HT1-2

Subject, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

 Score =  345 bits (885), Expect = 2e-99
 Identities = 201/488 (41%), Positives = 290/488 (59%), Gaps = 34/488 (6%)

Query: 17  VTALLLAGCASIPDLGDKPEIRAPQSVEAGRSLSADTVA------WPSENWWSAYGDPQL 70
           ++A +L GC S+PD    P++      EA    S +T +      WPS NWW  Y D QL
Sbjct: 23  LSAFVLTGC-SVPD--HYPDLATMW--EANELSSTNTFSHQAEMDWPSANWWQRYQDAQL 77

Query: 71  TSLIEEGLRNSPDMAVALARFRQATAMAQQSGAALLPTVDATANAGVTKQS--YNMGMPK 128
             LIEE L++SP + +A+AR + A   A+Q+GA     +   A+A  +K S  Y    P 
Sbjct: 78  NHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSERYQSATP- 136

Query: 129 DFVPQGWLGTGKVGLDFGLDIDLWGKNRASLAAATSEARAAEIDAQQARLALTTAIADAY 188
              P GW   G + L+F  D D WGKNRA++ AATSE  AAE ++  ARL ++T+IA+AY
Sbjct: 137 ---PDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAY 193

Query: 189 ADLARLYDEAEIQERTLEIRTASQKLVADRRQNGLETRGSVRQADATVSSAKAQLAAARV 248
           A+LARLY   E     L++R  + +L+  R  NGLET GSV QA A  +S +A+L   + 
Sbjct: 194 AELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQE 253

Query: 249 AIELRQHQIAALIGAGPDRGLAMTRPQIGQLAPLGLPADVTTNLVARRPDVAAALARTQA 308
           +I+L+++ +AAL+G GPDR  ++  P I   +  GLP++    L+  R D+ AA  R +A
Sbjct: 254 SIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEA 313

Query: 309 AASRIKVARASFYPAVSLSALIGVQSLGYETLFTGTGASGGSTSFADNLFKKDSLFGSAG 368
           AA ++ +A+A FYP V+LSA IG Q+ G                  D+LF   +  G+ G
Sbjct: 314 AAQQVGIAQAQFYPDVTLSAFIGYQAFG-----------------LDHLFDSGNDAGAIG 356

Query: 369 PAISLPIFHGGQLRGQYRGARATYDEAVASYDKTVLGAYQDVADAVTSRRTLDQRLTDAK 428
           PAI LP+F GG+L GQ   A A Y EAVA Y+ T++ A  +VAD VTS + L  R+   +
Sbjct: 357 PAIYLPLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTE 416

Query: 429 AALAASQDAYGVAQQRYKGGLSTYLDVLNVEDQLLAARQSVAQLEASAFSLDIALIRALG 488
            A+  ++ A  +A  RY+GGL+TYLDVL  E+ LL  ++++  L++ AFSLD+ALI ALG
Sbjct: 417 QAVQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALG 476

Query: 489 GGFAASDA 496
           GGF  +++
Sbjct: 477 GGFETTES 484