Pairwise Alignments

Query, 470 a.a., Flagellar cap protein FliD from Sphingobium sp. HT1-2

Subject, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

 Score = 68.9 bits (167), Expect = 5e-16
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 17/247 (6%)

Query: 220 MTSTSDPANAKITLDGT-DYEYASNTIDDAIPYLRIELTA-ADVNST-VNLTMTQPTATM 276
           MT      ++ + LDG       +N I++AI  + + L    D N     + +      +
Sbjct: 424 MTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERV 483

Query: 277 KDLLQEFVDAYNTLMKALNTSTSTGTDSSTAGVLNGVSAVRDMKSQLSKITSTQL-ASTG 335
           ++ +++FV AYN   +           +  AG L G S VR   S+L  + S+ +  +  
Sbjct: 484 RNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPE 543

Query: 336 SYKTLADIGIATNRDGTLTLNTDTLDKALAADPAGITKMLNPAKSTADNLGLSGLMDSVR 395
           + K+L + GI T R GTL +N   LD+ L  +   + +            G  G    V 
Sbjct: 544 NLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFG---------GNQGFAKRVE 594

Query: 396 DNIELENGPIKAAQDRYEKLADSLTEQLEKLDEDMADYETRLTSIYSAMQTKLSALNATQ 455
           D I    G   + + R +    SL EQ  +LD+D    + R+ S+      K SA+    
Sbjct: 595 DAISSMTGVTGSIRTREK----SLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDAT 650

Query: 456 SYLQQQI 462
           S +Q Q+
Sbjct: 651 SKMQSQL 657



 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 13  LSALGANSGIDTSALVTSLVSATRDPRQSAITTQQTTNNARISALASAISSLDTFADALT 72
           L  +G N+G D + +V+ +VSA R P+Q  I  ++T  +  ISA      SLDT  + +T
Sbjct: 3   LGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMT 62

Query: 73  SVLSGAEY-TGTPNSTNTNIASVSLLSGGTPTGMPAQLVVKSLATARIFASTATSGATSS 131
                  +     +++N  + S +     T   +     V  L  A+     A+      
Sbjct: 63  QFRQEKAFAVRKVDTSNEQVVSAT----ATTEAIAGNYSVDVLQLAQSH-KIASEVLDKD 117

Query: 132 TAVGTGSLTITTAGGKTATITVDSSNNSFSGLASAINA--ADIGVTASVVTDAQGTRLVF 189
              G G L I + G K+ T+ V   N+    +   IN   ++ GV AS++ D +G RL+ 
Sbjct: 118 AKFGPGKLHI-SLGDKSFTLDV-QGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIV 175

Query: 190 KGETGAANDFTITSSADS 207
                +  D ++  SA +
Sbjct: 176 ASNV-SGKDHSVKMSAQA 192