Pairwise Alignments

Query, 294 a.a., Flagellar motor switch protein FliM from Sphingobium sp. HT1-2

Subject, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (267), Expect = 4e-28
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 2/289 (0%)

Query: 6   SFAFGRGDAQAPVMLSGLDRLGEKLGRRIRALIEPISGIRPHVVAEDARVVEFGAWSAGA 65
           +F F   D      +  L+ + E+  R +R  +  +      V     ++++FG +    
Sbjct: 36  NFDFSSQDRIVRGRMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTL 95

Query: 66  PNFCSLSIYRLLPLKGQMLLCMDATMISTLVDCFYGGLGNRALPARG-EFTPTEDRLIAR 124
               SL++ R  PLKG  L+ M+A ++  LV+ F+GG G       G EFTPTE R+I  
Sbjct: 96  YVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQL 155

Query: 125 LSETIMARMVECWSEVLPLEPGLLLRETGIGFAAAAQPADQMVVQRFRVGLDRDREWSID 184
           L + + A   E WS V+ +E   L  E     A    P + +VV  F V +D        
Sbjct: 156 LLKIVFADYKEAWSPVMGVEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGG-DFH 214

Query: 185 MVFPLAALRGVEALMGSKVASDDEHVDPVWQARVARRMRDIRLPARTVLARPNLSLAELM 244
           MV P + +  +  L+ + V SD    D  W   +   + D+ +  R  L   +++L +LM
Sbjct: 215 MVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLM 274

Query: 245 QLKAGDIIPVTIGRSLPLIVGDRIVAHGTIGEQDGRAAFQIEKIAQGPE 293
           +L+ GD+IP+ +     + V +       +G    + A Q+ +  + P+
Sbjct: 275 ELQVGDVIPIKMPEHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323