Pairwise Alignments

Query, 245 a.a., RNA polymerase sigma factor for flagellar operon from Sphingobium sp. HT1-2

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 21/241 (8%)

Query: 13  LTYGRAGLANSPEQLARRYMPLVRKIAWHVHGRVSSAIEVEDLLQIGMVALVESANSFE- 71
           ++ G A    + +++    + LV  IA     R    ++  DL+Q G + L+++ + FE 
Sbjct: 377 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEY 433

Query: 72  DRGLGFASYAQLRVRGAMIDHLRRHSTLCR---SAMATRKKLAATRAKLEQKLGRAPLEA 128
            RG  F++YA   +R A+   +   +   R     + T  KL     ++ Q++GR PL  
Sbjct: 434 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPE 493

Query: 129 EMAAELGMDAADYREAADGAE--MVQHTSIDEVYSDQSMWFAD-VEDRADDI----MERE 181
           E+A  + M     R+    A+  +   T I +   D+     D +ED   ++        
Sbjct: 494 ELAERMQMPEDKIRKVLKIAKEPISMETPIGD---DEDSHLGDFIEDTTLELPLDSATAT 550

Query: 182 SLKGALAKCIGELPEREALVLQLYFVEELN----LEEIGQTLDIGAARVCQIKKSALDKL 237
           SLK A    +  L  REA VL++ F  ++N    LEE+G+  D+   R+ QI+  AL KL
Sbjct: 551 SLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 610

Query: 238 R 238
           R
Sbjct: 611 R 611