Pairwise Alignments

Query, 380 a.a., N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Sphingobium sp. HT1-2

Subject, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

 Score =  253 bits (645), Expect = 8e-72
 Identities = 152/375 (40%), Positives = 217/375 (57%), Gaps = 16/375 (4%)

Query: 6   TNHDALALAERLLACPSVTPAVGDVFAELEAMLVPLGFTVDRFVSGVAPDGPVENLLAWR 65
           T+   LALA+ L++  SVTPA       +   L  LGF ++  V          N  A R
Sbjct: 2   TDSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFE-----DTTNFWARR 56

Query: 66  TTGAGPHFAFAGHLDVVPPG--HGWASDPFTPVVRGDLLYGRGAVDMKGAIAAFVAALH- 122
            T + P F FAGH DVVP G    W + PF P V    L+GRGA DMKG++A  + A+  
Sbjct: 57  GTQS-PLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVER 115

Query: 123 ---ELPDALPGTISLIITGDEEGPATYGTLALMDRMVAHGLHPDMCLVGEPTSSARLGDV 179
              E PD   G+I  +IT DEEGP   GT+ +++ ++A     DMC+VGEP+S+  +GDV
Sbjct: 116 FIAEHPDH-QGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDV 174

Query: 180 VKIGRRGSVNMWIKVAGTQGHVAYPHLADNPIPALVRILAKIDAEVLDTGTDWFQPSNIE 239
           VK GRRGS+   +KV GTQGHVAYPHLA+NP+   +  LA++ A   D G  +F P++ +
Sbjct: 175 VKNGRRGSITGDLKVKGTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQ 234

Query: 240 ITDLEVGNPAHNVIPASATARISIRFNDQHSGASLIDRISAIAASEGGSVEAK--ISGEP 297
           I +L+ G  A NVIP     + + RF+ + +   +  R+ ++  + G   + K  +SG+P
Sbjct: 235 IPNLQAGTGASNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWTLSGQP 294

Query: 298 FLTQPGTLSTLISDAIRDVTGLETELSTTGGTSDARFLSRL-CPVAEFGLNNATMHKLDE 356
           FLT  G L   +  A+ +V      L TTGGTSD RF++++   V E G  NAT+HK++E
Sbjct: 295 FLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNE 354

Query: 357 AVAVADLHDLTHIYR 371
            V +ADL  LT +Y+
Sbjct: 355 CVRIADLEKLTDMYQ 369