Pairwise Alignments

Query, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

Subject, 692 a.a., DNA helicase RecG from Vibrio cholerae E7946 ATCC 55056

 Score =  234 bits (596), Expect = 2e-65
 Identities = 159/434 (36%), Positives = 235/434 (54%), Gaps = 28/434 (6%)

Query: 563 RRKARMKERIREIAGELLKTAAERALRPAEIAEPDAAGYPA---FVDRFPYQETDDQDRA 619
           R  A+++  + E+  + L   A R+    ++A P A  +      + + P+  T  Q R 
Sbjct: 216 RHPAQIRLIMEELLAQNLSMLAIRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRV 275

Query: 620 IGDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQHHMN 679
           + ++  DL    PM RLV GDVG GKT VA  AA  A   G QV ++ PT LLA QH +N
Sbjct: 276 VAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALN 335

Query: 680 FVERFRGFPLEIARLSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLEFKRLGLVIV 739
           F +      +++  L+  +  K  +   A +A G + +VVGTHAL  + + F  L LVI+
Sbjct: 336 FAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVII 395

Query: 740 DEEQRFGVTHKERL--KSLKTDV--HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRL 795
           DE+ RFGV  +  L  K  K     H L +TATPIPRTL M      E SVI   P  R 
Sbjct: 396 DEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRT 455

Query: 796 AVRTYIMP---WDGVV--IREALLREHYRGGQSFFVVPRISD--------LTEVEEFLRT 842
            ++T  +P    D +V  IR A L E   G Q+++V   I +          E  E L+ 
Sbjct: 456 PIQTVAIPDTKRDEIVERIRHACLNE---GKQAYWVCTLIDESEVLEAQAAAETAEELQR 512

Query: 843 EVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRF 902
           ++PEVK  + HG+M   + +  M AF +    +L++TT++E G+D+P+A+ +II   +R 
Sbjct: 513 KLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERL 572

Query: 903 GLAQLYQLRGRVGRSKTRAYAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDLD 962
           GLAQL+QLRGRVGR    ++      A   +++TA+KRL VL + +    GF +A  DL+
Sbjct: 573 GLAQLHQLRGRVGRGTVASHCVLLFHAP--LSKTAQKRLGVLRESND---GFVIAQRDLE 627

Query: 963 IRGAGNLVGDEQSG 976
           IRG G L+G +Q+G
Sbjct: 628 IRGPGELLGTKQTG 641