Pairwise Alignments

Query, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score =  739 bits (1908), Expect = 0.0
 Identities = 447/1132 (39%), Positives = 641/1132 (56%), Gaps = 30/1132 (2%)

Query: 31   IARAAHGSDATRAVFVASDEQLMRAVAETAHYFAPEIELIEIPAWDCLPYDRASPSLRTA 90
            IA  A+   +   + V   +  ++ + E   +   E+ L   P W+ LPYD  SP     
Sbjct: 33   IAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALF--PDWETLPYDNFSPHQDII 90

Query: 91   SARLAGLHALQAKPKGPQLVLTTLNALTQRTLTPFRVRQLVARLAPKERIAITRLADMLQ 150
            S R++ L+ L +  +G  + +  ++ L QR      + Q    +   +  ++ +L   L+
Sbjct: 91   SDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRLQLE 148

Query: 151  SNGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPLRLDFFGDEIETVRRFDPTDQRTTGSV 210
            ++ Y   D V   GE+A RG I+DLFP G   P R+DFF DEI+T+R FDP +QR+   +
Sbjct: 149  NSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAEM 208

Query: 211  DGFTLLPASEALLDEDTIKRFRGRYRETFGATATGDPLYQAVSEGRRLAGMEHWLPLFEE 270
            D   LLPA E       I+ FR R+R+ F A    + +Y  VS+G   AG+E+W PLF E
Sbjct: 209  DEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPLFFE 268

Query: 271  KLVPLTDHLGDDAIIVRDHGVVGAADARFEAIRDYHANRIAAKSADPGAYRPL-KPEALY 329
                L D+L  ++ ++    VVG  +   +        R   ++ DP   RPL  P  L+
Sbjct: 269  HSETLFDYLPANSQLL----VVGELEKAIDQFLTDVDYRYDQRNIDP--LRPLLPPNELW 322

Query: 330  LDAAEWDASAAVWPMHATTPFHEPESATVLDFAVDGPRDFAPERAQNVNVYEAVGKHIDA 389
            L   E  A     P    T       A  ++  V      A E  QN     A+ +  + 
Sbjct: 323  LRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEH-QNKEPLAALRQFSEQ 381

Query: 390  LRRTKKKVVIASYSAGARERLSGLLADHGVARLAAADSWQEALGTAAGGSAVLTVLGLDH 449
                  K++ +  S G RE L  LL      +L        +L         L +   + 
Sbjct: 382  FTG---KIIFSVESEGRREALLELLQR---IKLRPQSQNDFSLACQQTEKYSLVLGSAER 435

Query: 450  GFTAPD--VAVLTEQDMLGDRLVRRAKRKK-----SADAFLAELATLSPGDLVVHMDHGI 502
            GF   D  VA++ E D+LGDR+++R ++K      ++DA +  LA L PG  VVH+DHGI
Sbjct: 436  GFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGI 495

Query: 503  GRYEGLTQIPVSKTAHDCVALSYAGGDKLYVPVENLEVLSRY-GSDSEGVSLDKLGGEAW 561
            GRY GL  +       + V L Y    KLYVPV +L ++SRY G   E   L KLGGEAW
Sbjct: 496  GRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAW 555

Query: 562  QRRKARMKERIREIAGELLKTAAERALRPAEIAEPDAAGYPAFVDRFPYQETDDQDRAIG 621
             + + +  E++R++A ELL   A+R ++P      D   Y  F   FP++ETDDQ  AI 
Sbjct: 556  VKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAIN 615

Query: 622  DVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQHHMNFV 681
             V+ D+   + MDRLVCGDVGFGKTEVA+RAAFVA   G QV V+ PTTLLA+QH  NF 
Sbjct: 616  AVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFR 675

Query: 682  ERFRGFPLEIARLSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLEFKRLGLVIVDE 741
            +RF   P+ +  LSR    KE K     +ADG +DI+VGTH LL+  + F  LGL+IVDE
Sbjct: 676  DRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDE 735

Query: 742  EQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYI 801
            E RFGV  KE++K+++ DV +LTLTATPIPRTL MAMSG+R+LS+I TPP  RLA++T++
Sbjct: 736  EHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV 795

Query: 802  MPWDGVVIREALLREHYRGGQSFFVVPRISDLTEVEEFLRTEVPEVKPIVAHGQMSATDV 861
               +  VIREA+LRE  RGGQ +F+  ++  + +V   L   VPE +  VAHGQM   ++
Sbjct: 796  RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMREREL 855

Query: 862  EERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQLYQLRGRVGRSKTRA 921
            E+ M+ FY +R+++L+ TTI+E+G+D+P+ANT+I+ RAD  GLAQL+QLRGRVGRS  +A
Sbjct: 856  EKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQA 915

Query: 922  YAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHIKEV 981
            YAY  TP  + IT+ A KRL+ ++ L+ LGAGF LA+HDL+IRGAG L+G+EQSG I+ V
Sbjct: 916  YAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSV 975

Query: 982  GFELYQSMLEDAIMDAKAGGAGLEARRDSFSPQISVD--APIMIPEEFVPDLDLRMGLYR 1039
            GF LY  MLE A+   K+G     A  D    Q  V+   P ++PEE++PD++ R+ +Y+
Sbjct: 976  GFTLYMEMLEQAVEALKSGKE--PALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033

Query: 1040 RINELEDRQGLEAFAAELIDRFGKLPAPTQNLLKIIEIKQNCLKANIAKIDVGPKGALVS 1099
            +I  +  +  L     ELIDRFGKLP    NLL I E+K N ++  + KI+   +G  V 
Sbjct: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093

Query: 1100 FFEDRFPSPAGLVAYVQRLDGVARLRPDSKVVVTRAWPDPAARLNGALQLSK 1151
            F+ +   +P  LV  +Q    +  +   +K+  T    + +AR+     + K
Sbjct: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLK 1145