Pairwise Alignments

Query, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score = 1143 bits (2956), Expect = 0.0
 Identities = 601/1176 (51%), Positives = 804/1176 (68%), Gaps = 25/1176 (2%)

Query: 1    MTDLQKILKAKAPLTLSGVPAGFQPWLLADIARAAHGSDATRAVFVASDEQLMRAVAETA 60
            M +L + L     +  +G+P GF   +L ++A A  G  A   + VA D+  +  +AET 
Sbjct: 1    MKNLLESLAVGRRIEAAGLPEGFDALVLGELA-ARPGVPAV--LHVARDDVRLARLAETI 57

Query: 61   HYFAPEIELIEIPAWDCLPYDRASPSLRTASARLAGLHALQAKPK---GPQLVLTTLNAL 117
             +F P +E++E PAWDC+PYDR SP++   + RL  L  L  +P    G +LVLTT +A+
Sbjct: 58   AFFHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAI 117

Query: 118  TQRTLTPFRVRQLVARLAPKERIAITRLADMLQSNGYVRTDTVHDRGEFAIRGGIVDLFP 177
             QR      + + V       R+ + +L D L  +GY R++ V + GE+A+RGGIVD+FP
Sbjct: 118  LQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFP 177

Query: 178  GGEEQPLRLDFFGDEIETVRRFDPTDQRTTGSVDGFTLLPASEALLDEDTIKRFRGRYRE 237
             G  +PLRLD FGDE++++R FDP  QRTTG  D   L P SE +LD+++I RFR  YRE
Sbjct: 178  PGAPEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRE 237

Query: 238  TFGATATGDPLYQAVSEGRRLAGMEHWLPLFEEKLVPLTDHLGDDAIIVRDHGVVGAADA 297
             FG  +  D LY+A+S G    GMEHWLPLF E +  L  ++ D  + + D G+ GA  +
Sbjct: 238  LFGTPSAADALYEAISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTL-DPGLDGALRS 296

Query: 298  RFEAIRDYHANRIAAKSADPGA-----------YRPLKPEALYLDAAEWDASAAVWPMHA 346
            R + I +Y   R   +S   GA           Y  L P  ++L+  E+    A  P  A
Sbjct: 297  RQDQIFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAA 356

Query: 347  TTPFHEPESAT----VLDFAVDGPRDFAPERAQ-NVNVYEAVGKHIDALRRTKKKVVIAS 401
             + +  P+ AT    V DF      +FA  RA+   NV++A+  H  ALR   K+VV+ +
Sbjct: 357  FSAYAAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTA 416

Query: 402  YSAGARERLSGLLADHGVARLAAADSWQEALGTAAGGSAVLTVLGLDHGFTAPDVAVLTE 461
             + GARER++G+L +HG++ +  A++W EAL  A   + VLT++ LD GF  PD+AV++E
Sbjct: 417  ATMGARERMTGVLREHGLSPIVTAETWAEALERAKKATVVLTLI-LDRGFETPDLAVISE 475

Query: 462  QDMLGDRLVRRAKRKKSADAFLAELATLSPGDLVVHMDHGIGRYEGLTQIPVSKTAHDCV 521
             D+LGDRL R  ++KK  D F+ +++ LS GDLVVH+DHGIG+YEGL  +      HDC+
Sbjct: 476  ADVLGDRLSRPVRKKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCL 535

Query: 522  ALSYAGGDKLYVPVENLEVLSRYGSDSEGVSLDKLGGEAWQRRKARMKERIREIAGELLK 581
             + YA  ++LYVPVEN+EVLSRYGS+  GV LDKLGG AWQ RKA++K+RIR++A +L+ 
Sbjct: 536  RVVYADNNRLYVPVENIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIG 595

Query: 582  TAAERALRPAEIAEPDAAGYPAFVDRFPYQETDDQDRAIGDVIEDLGAGRPMDRLVCGDV 641
             AA R L+  E+  P    Y  F  RFPY ETDDQ RAI D ++DL AGRPMDRL+CGDV
Sbjct: 596  VAAARQLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDV 655

Query: 642  GFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQHHMNFVERFRGFPLEIARLSRLVPDK 701
            GFGKTEVALRAAF  AM+G QV V+ PTTLLARQHH+ F ERF G P+ I +LSRLV  +
Sbjct: 656  GFGKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTAR 715

Query: 702  EAKATKAGLADGTIDIVVGTHALLAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVH 761
            + KA K  +A GT+DIVVGTHALLAK + F+ LGL+IVDEEQ FGV HKERLK ++ DVH
Sbjct: 716  DTKAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVH 775

Query: 762  VLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGG 821
            VLTLTATPIPRTLQ+A++G+RE+S+I TPPVDRLAVRT+++P+D VV+REA+LRE +RGG
Sbjct: 776  VLTLTATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGG 835

Query: 822  QSFFVVPRISDLTEVEEFLRTEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTI 881
            Q F+V PR++D+ +V E L T VP+++ +VAHGQM+ + +EE M+AF D +YDVL++T I
Sbjct: 836  QCFYVCPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNI 895

Query: 882  VESGLDIPSANTLIIHRADRFGLAQLYQLRGRVGRSKTRAYAYFTTPANRIITETAEKRL 941
            VESGLDIP ANT+IIHRAD FGLAQLYQLRGRVGR++ R YAY T P  R +++TA KRL
Sbjct: 896  VESGLDIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRL 955

Query: 942  KVLSDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAIMDAKAGG 1001
             V+  LDTLGAGF LASHDLDIRGAGNL+GDEQSGHIKEVG ELYQ +LE+A+  A+  G
Sbjct: 956  DVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAARE-G 1014

Query: 1002 AGLEARRDSFSPQISVDAPIMIPEEFVPDLDLRMGLYRRINELEDRQGLEAFAAELIDRF 1061
             G+E    ++SPQI +  PI+IP+ +V DL LR+GLYRRI  + D   ++  AAE++DRF
Sbjct: 1015 PGVEEASGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRF 1074

Query: 1062 GKLPAPTQNLLKIIEIKQNCLKANIAKIDVGPKGALVSFFEDRFPSPAGLVAYVQRLDGV 1121
            G LP   +NLLK++ IK  C +AN  K+D GPKGA++SF ++ FP+P GLV ++ +    
Sbjct: 1075 GPLPDEVENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVAT 1134

Query: 1122 ARLRPDSKVVVTRAWPDPAARLNGALQLSKGLAKAA 1157
             +LRPD K+V  R W     R+ G  +L + LA  A
Sbjct: 1135 VKLRPDHKLVYRRDWEVARERIQGLGKLMRTLADIA 1170