Pairwise Alignments

Query, 700 a.a., ATP-dependent DNA helicase RecG (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score =  246 bits (627), Expect = 6e-69
 Identities = 149/382 (39%), Positives = 218/382 (57%), Gaps = 18/382 (4%)

Query: 269 PFAPTGAQRRAIGEIEGDMAQATPMLRLLQGDVGSGKTLVALMALLNAVEAGMQGAMLAP 328
           PF  T  Q  AI  +  DM QA  M RL+ GDVG GKT VA+ A   A + G Q A+L P
Sbjct: 603 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 662

Query: 329 TEILARQHYETLRKMASGLPIEIAILTGREKGKVREATLMGLANGSIHILVGTHAIFQEK 388
           T +LA+QH+E  R   + LPI + +L+  +  K ++  L  +A+G + ILVGTH +   +
Sbjct: 663 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 722

Query: 389 VQYKALGLAVIDEQHRFGVAQRMMLASKAERSP-HLLVMTATPIPRTLTLTYYGEMDVSR 447
           +++  LGL ++DE+HRFGV Q+  +  KA R+   +L +TATPIPRTL +   G  D+S 
Sbjct: 723 IRFADLGLLIVDEEHRFGVRQKEKV--KAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 LDEMPPGRQPIQTLVMSANRLDEVV-EGLARHVEGGGQAYWVCPLVEESETSDQAAAEMR 506
           +   P  R  I+T V  +   D V+ E + R +  GGQ Y+   L  + ET D+ AA++ 
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIREAVLREIMRGGQVYF---LHNQVETIDKVAADLE 835

Query: 507 AETLRQRFGDRVGLVHGKMKGPDKDAAMEAFAANRTQILVATTVIEVGVDVPNSSLIVIE 566
                     R+ + HG+M+  + +  M  F   R  +LV TT+IE G+DVP ++ I+++
Sbjct: 836 KLVPEA----RITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMD 891

Query: 567 GAERFGLAQLHQLRGRVGRGDKPSVCLLLRGNALGETSRA-----RLALMRETNDGFRIA 621
            A+  GLAQLHQLRGRVGR    +   LL       T  A      +A + +   GF +A
Sbjct: 892 RADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLA 951

Query: 622 EEDLKLRGAGEVLGTRQSGEAE 643
             DL++RGAGE+LG  QSG+ +
Sbjct: 952 THDLEIRGAGELLGEEQSGQIQ 973