Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (364), Expect = 1e-38
 Identities = 145/572 (25%), Positives = 247/572 (43%), Gaps = 90/572 (15%)

Query: 132 GDRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDKRIRKDTPISDI 191
           GD+++A      +  +A P + + ++    +G V+ +  GKL + P   +++K   +S  
Sbjct: 57  GDKVVAFIRTENEREVAEPSELIEQSLTRFIGRVK-LFKGKLNVAPDHPQLKK---LSLK 112

Query: 192 GTAKKG---------DLVLAEPTGRPPR--------ISARVTDILGDPFAPRSFSLIAIH 234
              KKG         D V+A     P +        IS ++TD   D  AP     + + 
Sbjct: 113 AKTKKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDA-NDKIAPW---WVTLA 168

Query: 235 KHGIPHVFPEAVEEEAVTASKLPLHEDK---REDLRHLPIVAIDPVDARDHDDAVWAAPD 291
           ++ +P+  P  +++         L +D    REDL  LP V ID    +D DDA++A   
Sbjct: 169 ENDLPNSEPAGIDD-------WQLKDDADLVREDLTALPFVTIDGESTKDMDDALYA--- 218

Query: 292 EDPTNEGGYKAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSL 351
                 G +   +AIAD + Y+ P   +D+ AR+RG ++Y P   +PMLP  L+ ++CSL
Sbjct: 219 -QQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSL 277

Query: 352 RAGQDRAAMACHLVIDAQGKV-KSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEG 410
              Q R A+ C + I   G +    RF  A I+  A L Y++    ++  SS + +P E 
Sbjct: 278 MENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEE 337

Query: 411 QGRAEGEAASPAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPER 470
                                       +   ++ L+A        RE    +  D P+ 
Sbjct: 338 ----------------------------IAQVVRDLYAFSQARANWRETHAVVFPDRPDY 369

Query: 471 RVVLDEWGKIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKL 530
           R  L     +V++    R  A+ L+E+ MI AN+ A K L+      ++  H     +K+
Sbjct: 370 RFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKM 429

Query: 531 VALKEYLATFDIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMG 590
             + E +A      A  + +        +++   ++E   +  +I + Q+ +    Q + 
Sbjct: 430 ADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGNQPLP 489

Query: 591 HFGLALGSYAHFTSPIRRYADLLVHRALVGAYDLELPAPKGKA---IPDRSSLSQEDYEN 647
           HF + L  YA +TSPIR+Y D++ HR L+ A+ L      GKA    PD +         
Sbjct: 490 HFAMGLDVYATWTSPIRKYGDMINHR-LLKAHIL------GKAPVQTPDET--------- 533

Query: 648 MGRVGEMISGHERRAMEAERETIDRYVAAFLS 679
              VGE ++ H +    AER   D   A  L+
Sbjct: 534 ---VGEELALHRKHHKIAERNVADWLYARTLA 562