Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  352 bits (903), Expect = e-101
 Identities = 246/752 (32%), Positives = 379/752 (50%), Gaps = 53/752 (7%)

Query: 23  PTRQQVMDFITESDTPAGKREIAKAFGLKGQEKI-ALKALLKDMADEGLLDIGPARAFHK 81
           P+R+ +++F+T+++ P  + ++ +A  L+G+E+   L+  L+ M  +G L     + +  
Sbjct: 23  PSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYAL 82

Query: 82  MGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRIRVVERGKRGALTIGDRILARTEE 141
              +  V    I   D    +        EG       ++   +   L  GD +L   + 
Sbjct: 83  PEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDI-----LLPHHQMRTLIHGDFVLV--QP 135

Query: 142 AGKGWLAHPMKKLAKATEMLLGVVEE---MADGKLWLRPVDKRIRKDTPI-SDIGT-AKK 196
           +G         +L +  E   G +        G  ++ P D RI  D  I +D+   A+ 
Sbjct: 136 SGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPNDLRAGARM 195

Query: 197 GDLVLAEPTGRPPR---ISARVTDILGDPFAPRSFSLIAIHKHGIPHVFPEAVEEEAVTA 253
           G++V+ E T R  R   +  +V ++LG+  AP   + IAI  H IPH +P  VE++    
Sbjct: 196 GNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGL 255

Query: 254 SKLPLHEDK--REDLRHLPIVAIDPVDARDHDDAVWAAPDEDPTNEGGYKAIVAIADVSY 311
           ++    E K  R DLR LP+V ID  DARD DDAV+     +    GG++  VAIADVSY
Sbjct: 256 TEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYC----EAKKGGGWRLWVAIADVSY 311

Query: 312 YVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAMACHLVIDAQGK 371
           YVRP +ALD+EA  RGNSVYFP  VVPMLP  LS+ +CSL    DR  M C + +   GK
Sbjct: 312 YVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGK 371

Query: 372 VKSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAEGEAASPAAQQAASTSL 431
           +  ++   A++   A L Y      +                 EG+       +A     
Sbjct: 372 LSGYKHYEAVMNSHARLTYTKVHEIL-----------------EGDEELRERYKA----- 409

Query: 432 SPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGKIVSVAVRERLDA 491
                 LV H L+ L   + +L+ AR++R  +  +  E + + +   KI S+    R DA
Sbjct: 410 ------LVPH-LEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDA 462

Query: 492 HMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLATFDIDFALGQVIR 551
           H LIE+ MI AN+A+A  +E  K   +YRVHE PG ++L   +++L    +D + G    
Sbjct: 463 HKLIEECMILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPS 522

Query: 552 PSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSYAHFTSPIRRYAD 611
           P+ +  L+K++GE  +KE I T +LRS  QA Y   N GHFGLAL  YAHFTSPIRRY D
Sbjct: 523 PTDYANLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPD 582

Query: 612 LLVHRALVGAYDLELPAPKGKAIPDRSSLSQEDYENMGRVGEMISGHERRAMEAERETID 671
           LL+HRA+   Y +     + +     +      +++M   GE  S  ERRA +A RE  D
Sbjct: 583 LLLHRAI--KYLIAKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSD 640

Query: 672 RYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLGAEHFFFDEAGKALQ 731
                ++  HVGE ++  +  V +FGFF  +  L  DGLV +STL  +++ +D  G+ L 
Sbjct: 641 WLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLV 700

Query: 732 GVESGDRYTVGQRLELRLAEADPINGALRFEL 763
           G   G  Y +G  +++++   +  +  + FEL
Sbjct: 701 GESFGAIYRLGDAVKVKVLAVNLDDRQIDFEL 732