Pairwise Alignments

Query, 748 a.a., General secretion pathway protein D from Sphingobium sp. HT1-2

Subject, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

 Score = 93.2 bits (230), Expect = 3e-23
 Identities = 98/426 (23%), Positives = 179/426 (42%), Gaps = 79/426 (18%)

Query: 280 GQSSSSPVTSSVPAAGASGGAGGGAAPASAAAAPVAAGSSGSSGSGISTR--GPAIVTRY 337
           G+S +S  T ++     +      ++ +S ++   + GSS +S S  S    G  I T  
Sbjct: 159 GRSLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTN 218

Query: 338 E------------------GANAIIVAANSDVQ--RMLGETIRQIDT--------RREQV 369
           E                  G   +IV   + V   R   + IRQ++            QV
Sbjct: 219 ESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQV 278

Query: 370 LVEAIIVEISDAAAKKLGVQFLLGSTSTGFAATNYSNASPSLITIAGAYGATKLGTTKTT 429
           ++EA I+E++ +   + G+ +    +S G    NY   S S+                  
Sbjct: 279 ILEAKILEVTLSDGYQQGINWSKAFSSNG---ANYKIGSGSI------------------ 317

Query: 430 VVAADGTTTTTETQTNSDLASSLTQAAVDSLASATGIVGGLGTQIGKNGIFGAIINAVKS 489
                     T+    + + S L       L +   ++GG    +  +G F A+I+ + +
Sbjct: 318 ----------TQDSNGNPITSVLP-----GLDAIGNLLGGQSNVVISSGSFDAVISFMAT 362

Query: 490 DTESNLLSTPSVMTLDNQKASILVG-QQVPVTTGEALSQNFDNQFR----TVQRQDVGIK 544
             + N+LS+P V   +NQKA I VG  +  VT   ++    DN       T+     GI 
Sbjct: 363 QGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGIS 422

Query: 545 LEVKPQINTGGAIKLFLKQ---EVSSVAGPVSNSSSDLII-----NKREIETTVTVDDGE 596
           L+V PQI+  G + L +     EV      +   S ++ +     + RE ++ +   DG+
Sbjct: 423 LDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 482

Query: 597 ILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRTKEDAQ 656
           ++ +GGL+  N    + ++P L D+P +G LF++ +K   KT L++ ++PT++      +
Sbjct: 483 VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVVGVNTWQK 542

Query: 657 RLTQQR 662
            L + R
Sbjct: 543 ELERSR 548