Pairwise Alignments

Query, 748 a.a., General secretion pathway protein D from Sphingobium sp. HT1-2

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  304 bits (779), Expect = 9e-87
 Identities = 213/683 (31%), Positives = 342/683 (50%), Gaps = 66/683 (9%)

Query: 3   RHILKYSAALALVLAAPVPGHAQQTLNVRDADIRAFIQDAARVTGRTFIIDNRVQGKVSV 62
           R ++    A A +L +      Q   N +  DI+ FI    +   +T I+D  ++GK++V
Sbjct: 8   RKLIAGVVAGATMLTSQFVWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINV 67

Query: 63  VTDRPLSKSEYFEIVLSTLRANGLVAVPAPGGAYRI---QPADGAAGQPSAVGRAATRNS 119
            +   L+  +Y++  L+ L+  G   V       ++   + A  AA + +        + 
Sbjct: 68  RSYDLLNDEQYYQFFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGLGDE 127

Query: 120 FVTEVFRLRSVDAASVLETLRPLISKEG--TVTANRAGNSIVVADYADNVARIRQVIARV 177
            VT +  L + +A  +   LR L    G   V      N ++++  A  V ++ +++ RV
Sbjct: 128 MVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLSGRAAVVNKLVEIVRRV 187

Query: 178 DRD-TSSTQMVMLKNAGAREIATSLQALVQSGGGENGAPAAASVVPIDSS-NAIAIRGDV 235
           D+   +S Q+V L+ A A E+   +  L ++   +   P  A  V  D   NA+ + GD 
Sbjct: 188 DKQGDTSVQVVPLEYASAGEMVRIIDTLYRATANQAQLPGQAPKVVADERINAVVVSGDE 247

Query: 236 NTVTRLANMARELDRQAASGTEIRVYWLEHADAEKLLPVL----QQLIGQSSSSPVTSSV 291
            +  R+  +   LD + AS    +V +L +A AE L+ VL    Q+L G+          
Sbjct: 248 KSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKD-------- 299

Query: 292 PAAGASGGAGGGAAPASAAAAPVAAGSSGSSGSGISTRGPAIVTRYEGANAIIVAANSDV 351
           P+A A G                              R    +  +   NA++++A  D 
Sbjct: 300 PSAQAGG----------------------------KRRNEINIMAHTDTNALVISAEPDQ 331

Query: 352 QRMLGETIRQIDTRREQVLVEAIIVEISDAAAKKLGVQFLLGSTSTGFAATNYSNASPSL 411
            R +   I Q+D RR QVLVEAIIVE+++      GVQ+     +     T ++N  P++
Sbjct: 332 MRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQW----AAKADGGTQFNNLGPTI 387

Query: 412 ITI-AGAYGATKLGTTKTTVVAADGTTTTTETQTNSDLASSLTQAAVDSLASATGIVGGL 470
             I AG + A     T  T       +T      N D     T+  V  LA A G V G+
Sbjct: 388 GEIGAGIWQAQDKEGTYIT-----NPSTGEVIGKNPD-----TKGDVTLLAQALGKVNGM 437

Query: 471 GTQIGKNGIFGAIINAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFD 530
              +   G FGA++ AV +DT SN+L+TPS+ TLDNQ+AS +VG +VP+ TG   S N  
Sbjct: 438 AWGVAM-GDFGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNS 496

Query: 531 NQFRTVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSSSDLIINKREIETTV 590
           N F+TV+R++VG+KL+V PQIN G A+KL ++QEVS V G   N+  D+    R + TTV
Sbjct: 497 NPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNG---NTGVDISFATRRLTTTV 553

Query: 591 TVDDGEILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILR 650
             D G+I+ LGGL+++  +++++++P L DIP +G LFKS S  +TK NLM+FI+PTI+R
Sbjct: 554 MADSGQIVVLGGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613

Query: 651 TKEDAQRLTQQRYGYVRGMQLQR 673
                + +  ++Y Y R +QL++
Sbjct: 614 DGVTMEGIAGRKYNYFRALQLEQ 636