Pairwise Alignments

Query, 405 a.a., General secretion pathway protein F from Sphingobium sp. HT1-2

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (491), Expect = 7e-54
 Identities = 117/407 (28%), Positives = 215/407 (52%), Gaps = 10/407 (2%)

Query: 1   MADFDYVAIDPAGKERKGSVKADSLDEARVKLDARKLFVVRLEPGAVSVARKRAGLSLRA 60
           + ++ +  I+  GK+  G + A S  E R KL  + + + +L+ G+VS+      L+   
Sbjct: 9   LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSL------LARLT 62

Query: 61  PKLSAKELTLFTRQLSTLIQVS-PLEESLRTISRQSEQDHVRVIVGKVHSGVLEGRRLAD 119
            ++ +K++T+ TRQL+T++    P+ ++L+ +     +  ++ I+ ++   V  G  L+ 
Sbjct: 63  HRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSK 122

Query: 120 ALGAEPKSFPALYRAMISAGESSGSLPTIMERLSELMERQAVMRSKVLTAIAYPSVLATF 179
           A+      F  LY  ++  GE SG+LP + ERL+   E+   +R+KV+ A+ YPS++   
Sbjct: 123 AMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLV 182

Query: 180 AVFVVAALMIFVVPKVVEQFDTVGQQLPLLTRLVMGISAFLAGYWWLLLILIGLGAFGFW 239
           A+ V   ++  V+P+    F   G +LP  T+ V+ +S ++  Y     I I    FG  
Sbjct: 183 ALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGL- 241

Query: 240 RALKIDSFRYRFDAMLLGL--PVLGRLIRDLHAARMARTLSTMVASRLPLMEGLSLTANT 297
           +AL+ +SF+ R     LGL  P++G ++     A+ +RTL+T  A+ +P++  L  TA T
Sbjct: 242 KALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKT 301

Query: 298 VHNRVLRKASDEIVEAIRGGGSLSAALKRAGVFPPLLVYLAASGESAGRLDTMLERAADY 357
             N     A +E+      G  +  A++    FP +++ +   GE +G+LD ML + A  
Sbjct: 302 SGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATI 361

Query: 358 LEREFDAFTSAALAMLEPIIIILMGGIVAVIILSILLPILQLQSLTG 404
            E E D        +LEP+II+ +G +V  +++++ LPI  L S+ G
Sbjct: 362 YEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408