Pairwise Alignments

Query, 405 a.a., General secretion pathway protein F from Sphingobium sp. HT1-2

Subject, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (480), Expect = 1e-52
 Identities = 118/402 (29%), Positives = 210/402 (52%), Gaps = 10/402 (2%)

Query: 1   MADFDYVAIDPAGKERKGSVKADSLDEARVKLDARKLFVVRLEPGAVSVARKRA----GL 56
           MA F Y   +  G +  G V+A + + A   L  + +    +  GA   A K A      
Sbjct: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGA---AEKSAFDFNWK 57

Query: 57  SLRAPKLSAKELTLFTRQLSTLIQVS-PLEESLRTISRQSEQDHVRVIVGKVHSGVLEGR 115
           +L  P +  + L +F RQ+ +L +   PL  S+R +++      ++  +  V + +  GR
Sbjct: 58  ALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGR 117

Query: 116 RLADALGAEPKSFPALYRAMISAGESSGSLPTIMERLSELMERQAVMRSKVLTAIAYPSV 175
            L+ ++   P  F  L+ +MI  GE++G L   + +L+   E++   R ++ TA+ YP+ 
Sbjct: 118 NLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTF 177

Query: 176 LATFAVFVVAALMIFVVPKVVEQFDTVGQQLPLLTRLVMGISAFLAGYWWLLL-ILIGLG 234
           + TF +  +  L + V+P+    F   G  LPL TR+++  S F   YW LLL I++GL 
Sbjct: 178 VITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGL- 236

Query: 235 AFGFWRALKIDSFRYRFDAMLLGLPVLGRLIRDLHAARMARTLSTMVASRLPLMEGLSLT 294
            F F   +   + R R+D + L +P++G ++     +R ART S M+++ +PL + L+L+
Sbjct: 237 LFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALS 296

Query: 295 ANTVHNRVLRKASDEIVEAIRGGGSLSAALKRAGVFPPLLVYLAASGESAGRLDTMLERA 354
           A  + N+ L +   E+   I  G ++SA    A +F PL++ + + GE  GR+D +L   
Sbjct: 297 AEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEV 356

Query: 355 ADYLEREFDAFTSAALAMLEPIIIILMGGIVAVIILSILLPI 396
           +D+ +RE D       A +EPI+++ +  +V V+ L I LP+
Sbjct: 357 SDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398