Pairwise Alignments

Query, 662 a.a., Excinuclease ABC subunit C from Sphingobium sp. HT1-2

Subject, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

 Score =  410 bits (1054), Expect = e-119
 Identities = 228/605 (37%), Positives = 349/605 (57%), Gaps = 19/605 (3%)

Query: 62  LKTLPTRPGVYRMQDARGDVLYVGKARALKNRVANYTQVDRLPNRLRRMVAQTRSMTIVT 121
           LKT+  +PGVYRM +A  +V+YVGKA+ LK R+ +Y + +    + + +V+    + +  
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 122 TNSEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLREDHDFPRVQKHRGARKYKGRYY 181
           T++E EAL+LE   IK+Y P YNVLLRDDKS+P+I L   H  PR+  HRGA+K +G Y+
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFL-SAHKHPRLSSHRGAKKRRGEYF 129

Query: 182 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIKRCSAPCV-DRIDTAGYA 240
           GP+  +G+V  T++ +QK+F +R C D+ ++NR+RPCL+YQI RC+ PCV   I   GY 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 241 ELVQDAQDFLGGKSTAVQQKLGAAMEAAAEALDFEQAAMIRDRLKALTFIQGSQAINAEG 300
           E+V   + FL GK   V   L   ME A+  L FE AA  RD+++A+  +Q  Q ++ + 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 301 LGDADIFALAEKGGSMCIQAFFIRGGQNWGHRSFFPVHTNDVATEEVLESFMAQFY---- 356
           L D D+   A++ G  CI    IR G+  G RS FP   +D +  EV ESF++Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 357 -EEVPPPKLILTDREPAECELMALALSERLGSKVRIEVPQRGERTRLIKQAQRNAVEALD 415
                P ++IL      E E + +A+SE  G KV   V   G R R +K A  NA+ A+ 
Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 416 RRLAETTTQAKILDEMVEAFGLDGVPDRIEIYDNSHIQGAHALGAMVVAGPEGFRKNAYR 475
            ++    T ++    + E  G+D +  R+E +D SH  G   + + VV   EG  K  YR
Sbjct: 370 TKMNHKMTISQRFKALQEELGMDAI-TRMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 476 KFNMKNPDISNDDFAMMREMFERRFGRAAREDPDRDGGEWPDLVLIDGGKGQLSAARAML 535
           ++N+       DD+A M ++ ERR+ +        D  + PD++ IDGGKGQL+ A  ++
Sbjct: 429 RYNITG-ITGGDDYAAMAQVLERRYSK------QLDSSKIPDIIFIDGGKGQLNRAYEII 481

Query: 536 EDMGIE---DVCMIGIAKGPHHGRDGREVFHLMDGREVSFPINHPLLFYMQRLRDEAHRF 592
                +      +IGIAKG    + G E    +DG E   P + P L  +Q +RDE+H  
Sbjct: 482 SSCWQDWPKYPKIIGIAKGVTR-KPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNH 540

Query: 593 AIGAHRAKRSKAITVSSLDEVPGIGPARKKALLMHFGTARAVRDAALEDLQRAPGVSKAV 652
           AI  HRA+R K    S+L+ + G+GP R++ALL + G  + ++ A++E++ + PG+S A+
Sbjct: 541 AIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHAL 600

Query: 653 AQQVY 657
           A+ +Y
Sbjct: 601 AENIY 605