Pairwise Alignments

Query, 775 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Sphingobium sp. HT1-2

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  507 bits (1306), Expect = e-148
 Identities = 305/776 (39%), Positives = 451/776 (58%), Gaps = 54/776 (6%)

Query: 8   FDAIKDHPFDAALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGANP 67
           FD ++  P        YL Y++  I  R+LP + DGLKPV RR+++AM  L +       
Sbjct: 7   FDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA----- 61

Query: 68  DVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNF 127
                     +  YKK AR VGDV+GKYHPHGD++ Y+AMV +AQ FS R PLVDGQGN+
Sbjct: 62  ----------SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 111

Query: 128 GNIDGDNA-AAMRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFPGLFPNLLA 186
           G  D   + AAMRYTEA+L++ A  L++ L +GTVD++P ++G  +EP++ P   P++L 
Sbjct: 112 GAPDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILL 171

Query: 187 NGASGIAVGMATSIPPHNVGELLDAATLLIDSPEADDAALMEIVKGPDFPTGGVLVDNQA 246
           NG +GIAVGMAT IPPHNV E+ DA   LID+P A    LM+ VKGPDFPT   ++    
Sbjct: 172 NGVTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTV 231

Query: 247 IISEAYRTGRGSFRTRARFSTGRNEDGSWEAEGIEKLAGGTWQLVISEIPYQVQKSKLIE 306
            + + YR+GRGS + RA           W  EG +        +VI+ +P+QV  +KL+E
Sbjct: 232 ELEKIYRSGRGSIKMRA----------VWCKEGSD--------IVITALPHQVSGAKLLE 273

Query: 307 QIAALINDKKLPILEDVRDESDEA--IRIVIVPKSRNVPVDILKDSLFRLTDLENRFPLN 364
           QIAA +  KKLP++ED+RDESD     RIVIVP+S  V  D+L + LF  TDLE  F +N
Sbjct: 274 QIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVN 333

Query: 365 LNVLDASHTPRVLGLRAVLVEWLKHQIEVLVRRAQHRLEKIAARLELLDGYIIAYLNLDR 424
           LN++   + P+V GL  +L EW+  + E +  R Q+RL+K+ ARL +L G +IAYLNLD 
Sbjct: 334 LNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDE 393

Query: 425 VIEIIRTEDEPKDVMMDEFSLTDRQAEAILNMRLRSLRKLEEMELRREHAELVKEQAELE 484
           VIEIIR ED+PK V+M  F LTD QA+AIL+ +LR L KLEEM++R E  EL KE+ +LE
Sbjct: 394 VIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLE 453

Query: 485 KLVESPARQRTRLKRDIADLRKRYGPDTVIGRRRTLVEEAGPAREIPLEAMIEREPVTVI 544
           +L+ S  R    LK++I     ++G D     RR+ + E   A+ +    ++  E +TV+
Sbjct: 454 ELLGSERRLNNLLKKEIKADADKFGDD-----RRSPLVEREEAKALTERDLMPSEAITVV 508

Query: 545 LSERGWIRAMSGHRDLAAADTLKFKEGDGPQFAFHAYTTDKLLMATSSGRIYTLGADKLP 604
           LSE+GWIR   GH       +L +K GD         +  + +   S GR Y+L +  LP
Sbjct: 509 LSEKGWIRHAKGHD--VDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLP 566

Query: 605 GGRGFGDPVRMMVDMDDQGGIVALMPARTGGQLLLASSDGRGFLADVADILAETRKGKQV 664
             RG G+P+   +++ +   I  ++        L+ S  G GF+    D+L++ R GK +
Sbjct: 567 SARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKAL 626

Query: 665 VNVRTGAKLAVVHAV-DPEADSIAVIGENRKLLVYSIIEMPKMARGQGVQM-------QR 716
           +N+   +++     + D + D I  I    ++L++ I ++P++++G+G ++        +
Sbjct: 627 INLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAK 686

Query: 717 YRDGGLSDAIAFRLSDGISWAM-GGETGRTRTEADMTPWRVARGAAGRMPPTGFPR 771
            R+  LS+ +   L  G S  +  G+       +D+  +R  RG  G + P G  R
Sbjct: 687 TREEVLSNLMV--LPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR 740