Pairwise Alignments

Query, 1054 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

 Score =  330 bits (845), Expect = 4e-94
 Identities = 257/1019 (25%), Positives = 470/1019 (46%), Gaps = 34/1019 (3%)

Query: 11   IRNPVPPLVLFAALMLAGVVSFLRMDINQNPDISFPMVSVTVSQPGAAPTELETQVTQRV 70
            I+ PV  + +   ++L G+ +  +M + + P+++  +++V+    GA+   ++  +TQ +
Sbjct: 8    IKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQPL 67

Query: 71   EAAVRGISGVEDITSFASEGQSLTNVQFKIGTPVDRAVNDVKNAVDQIRSDLPDGILEPQ 130
            E AV     ++ +TS +  G+S   V  K+ T  + A++DV    + +RS LP    +P 
Sbjct: 68   EQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAEDPT 127

Query: 131  VQRIDVDGGPIAYFSAEATDMTLEELSWYVDNTVAKRLLSVSGMAAVRRGGGVSREIRVI 190
            V         + Y    + ++   +++ Y++  V  +L +V+G++++   GG+   +RV 
Sbjct: 128  VTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGMKYALRVW 187

Query: 191  LDPARLQAYGVTAAQVNAQLSQVNINAAGGRTEIAGAEQSIRVLGNARNAHDLGQTQIAI 250
            LDPA++ A  ++AA V + L+  N  +A G+        +           DL    +  
Sbjct: 188  LDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDLESLVVKA 247

Query: 251  SGGRTVKLADIADVRDMYAEQRSLALMNGRQVTSFSLEKAKGSSDVTVYDDAMKVLDKLK 310
              G   +L DIA V    +     A  NGR+    ++  A  ++ + +  D +++L +L+
Sbjct: 248  EKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQ 307

Query: 311  KENPK-VQFKQLYSSVEYTRGQYHSAMSAMIEGAVLAVVIVFLFLRDWRATMISALAIPL 369
            K  P  ++   LY S        H  +  ++E A++ +V++ LFL   RA +I  + IPL
Sbjct: 308  KNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPL 367

Query: 370  SAIPSFWFMDMLGFTLNGISLLALSLVAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAA 429
            S I     M M+GF+ N ++LLA+ L  G++VDDAIV +EN+ RH++ G+S ++A+I   
Sbjct: 368  SLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGT 427

Query: 430  DEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVSVLMSLAVARLITPMIAAY 489
             EI + V+A T+ + AV+ P+ALM GI+G  F +F +T+  SV +S  VA  ++PM+ + 
Sbjct: 428  REIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSK 487

Query: 490  FLKAHGEASHGEGWLMDRYMSVLHWSLDQRKAKARRARGGFRNRFVAFFVDHRVWTLGIG 549
             LKA+ EA        +++   +H  LD+  A+          R +   + HR   +   
Sbjct: 488  MLKAN-EAP-------NKFELKVHHLLDRMTAR--------YERMLTAVMAHRPVVIAFA 531

Query: 550  MLAFVATLFAFGTLPMTFQPTINTDFSQVKIETVPGSTLEQTTAITRKVADMLAADTDVV 609
             + F +    F  +P    P+ +     +       + L+        V  +L+   +V 
Sbjct: 532  FIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQ 591

Query: 610  EAAFADIEPTSADIF----LTLKKTRPMSSVDWERKIAPKFQTIADARVN-FQSQSGGGF 664
             A      P S   F    +     R  S      ++    Q I    V  FQ     G 
Sbjct: 592  FAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGA 651

Query: 665  GRDIIMMYGSDDP---ELLEKTANQLVHEMAGIRELRAPRVQGDMQRPEIIIKPRLDLAA 721
            G  + + +    P   E L   A  ++ E+          +  +     + I    D A 
Sbjct: 652  GSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAG 711

Query: 722  SMGVTTAALSQSIRIATIGDIDQNVAKFSLSDRQIPIRVALAEDSRKDIATIENMPVPTV 781
            + GVT   +   I ++T+   D  V +  L+ R   +   +    R +  ++ +  V   
Sbjct: 712  AYGVTMQDI--GITLSTM-MADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAA 768

Query: 782  SGGSVPLKVVADISFGAGPTQIRRYNQIRRVVVGADLAPGIVTSQANQKINELPTMKAIK 841
             G  +PL  +  I   A P  +  +NQ+    VGA  APG     A      L + K  K
Sbjct: 769  DGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPK 828

Query: 842  EGRIQGVQKIEAGDSKFQAEMLTNFVIAVFSGIMLVLAVLVLLYKRIMPPFVNLGSLLLA 901
                 G      G+++      +         + ++  VL + ++ +  P V + S+ LA
Sbjct: 829  -----GYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLA 883

Query: 902  PLGGAIALHIAGQPMSLPVFIGLLMLLGIVAKNSILVIDFALEE-MEKGVPKQEAILDAG 960
              G  IAL      M++   +GL+ L+G++ K+ IL+ + A EE +   + + EA++ A 
Sbjct: 884  ICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAA 943

Query: 961  HKRAQPIVMTTVAMVAGMVPTALSLSGDAAWRAPMGITVIGGLLLSTVLTLVIVPAVFS 1019
              R +PI+MTT AM+AG++P   +    AA R  +GI ++ GL + T+ TL ++P ++S
Sbjct: 944  KVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYS 1002