Pairwise Alignments

Query, 390 a.a., CzcABC family efflux RND transporter, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 372 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  119 bits (298), Expect = 1e-31
 Identities = 103/354 (29%), Positives = 172/354 (48%), Gaps = 15/354 (4%)

Query: 31  IGGVVAVALVAAAAALSMRGKDAAAPDAAPQAPVVSVLTPGQTMVARTVSSTGSLAARVD 90
           I  +V   L AA AAL+  G++  A   AP+ P V V T      A +V+ TG + ARV 
Sbjct: 5   ISRLVTFGLAAALAALAGCGEEKPA---APELPRVYVQTVKSADFAASVALTGDVQARVQ 61

Query: 91  MPVGVVGEGGMVTRVLVQPGDWVRAGQVLATVERSVQSEQVNSLAAQVEVQRANAKLAQA 150
             +     G ++ R  V  GD V A QVLA ++       V+S AA V  ++A    ++A
Sbjct: 62  TRLSFRVNGKIIQRN-VDVGDRVTARQVLARLDPKDLQTNVDSAAAAVAAEQARVSQSRA 120

Query: 151 QLERAKALVGRGFISAADIDQRTATRDQAVAQVRVAEAQLAEQRARTGRLDIRAPASGLV 210
              R + L+ +G+ S ++ D   A    + + ++ A+AQLA  R + G   + A A G++
Sbjct: 121 AFVRQQKLLPKGYTSRSEYDSAQAAVRGSESSLKAAQAQLANAREQLGYTALVADAPGVI 180

Query: 211 LTRTVEPGQIVQAGGGTLFRMAKDGEMEMQAQVAEADLATLRAGNSATVTPVGS-NQHFS 269
             R  E GQ+VQA    +F +A+DG+ +    V E+         +  VT + + N   S
Sbjct: 181 TARQAEVGQVVQA-TMPIFDLARDGDRDAVFNVYESLFVQPPTNQAVQVTLLDNPNIKVS 239

Query: 270 GRVWQVSPVVDPQTRQGIARIAVAYN---DAIRPGGFASATITSGSGNTPLLPESAVQSD 326
           G+V +V+P V  QT  G  +I +A +   + +  G   S  +++ +  +  LP +A+  D
Sbjct: 240 GKVREVTPAVSAQT--GTLQIKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKD 297

Query: 327 AKGSY----VYIVNGKNQVERRDVKVGQVSDTGVAITSGITGAERIVTSAGAFL 376
                    V++V+ + +V  R V V +   + V I  G+   E++V + G  L
Sbjct: 298 LGEQLGKPAVWVVDEQGKVNLRKVTVTRYLTSKVIIGDGLKSGEKVVVAGGQLL 351