Pairwise Alignments

Query, 588 a.a., Single-stranded-DNA-specific exonuclease RecJ from Sphingobium sp. HT1-2

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (700), Expect = 8e-78
 Identities = 182/470 (38%), Positives = 258/470 (54%), Gaps = 17/470 (3%)

Query: 71  MDAAAERLADAVQRGEDVRIFGDYDVDGATSAALLIRLLRDIGLDARPY-IPDRLMEGYG 129
           +D A E L  A+   + + + GD+D DGATS+AL +  LR +G     Y +P+R  +GYG
Sbjct: 54  IDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYG 113

Query: 130 PSGEALVRLAGDGAQLIVTVDCGAQAFEALDMAKAAGVDVVVVDHHKCAAALPVALALVN 189
            S E + +    GA++I+TVD G  + E +  AK  G+ VVV DHH     LP   A+VN
Sbjct: 114 LSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVN 173

Query: 190 PNRLDENDAAAVHGHLAAVGMAFLLGAALLRTLRARGWFATR--PEPAIMELLDIVALGT 247
           PN       A     LA VG+AF L  AL   +R +GWFA +   EP +MEL+D+VALGT
Sbjct: 174 PNL---QQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGT 230

Query: 248 VADVAQLKGLNRAFVAQGL-KVMAKRRNIGLAALMD-ASRLNRAPLCHDLGFALGPRINA 305
           VADV  L   NR  V QGL ++ A     G+ AL++ A R  R  +  D GFALGPRINA
Sbjct: 231 VADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINA 290

Query: 306 GGRVGKADLGVRLLTTEDPAEAARIAAELDRLNEERRAIESIVQEQAEAL---LAAQDNR 362
            GR+     GV LL   +   A R+A+ELD LN+ R+ IE  ++++A A    L   D+R
Sbjct: 291 AGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDR 350

Query: 363 AV---ALVAGPGWHPGVIGIVAGRLKERAGRPAIVVALDEDGVGKGSGRSISGVDLGAAV 419
            +    ++    WH GVIGI+A R+KE+  RP I  A   DG  KGS RS+ G+ +  A+
Sbjct: 351 ELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDAL 410

Query: 420 --LAAKDSGLLVAGGGHAMAAGLTVMADKVDALAEFLDDRLSAAVARARDGRALLIDAVL 477
             +  ++ G+++  GGHAMAAGLT+     +      D  +   +  A     +L D  L
Sbjct: 411 DKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGEL 470

Query: 478 APAGVNPDFVAAIEAGGPYGAGWPAPLIAAGPMRVIRADVVGNGHLRAIM 527
            P   +      + AGGP+G  +P PL   G  +V+   +VG  HL+ ++
Sbjct: 471 KPEEFSLHTAELLRAGGPWGQAFPEPLF-DGEFKVLHQKLVGEKHLKLML 519