Pairwise Alignments

Query, 285 a.a., '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 from Sphingobium sp. HT1-2

Subject, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (518), Expect = 2e-57
 Identities = 127/277 (45%), Positives = 163/277 (58%), Gaps = 5/277 (1%)

Query: 11  PGLYIVAGPIGNLGDLTPRAAEVLRLADVVAVEDTRVSARLLRHAGSDRPMIPYHDHSAE 70
           P LYIV  PIGNLGD+T RA +VL   D++AVEDTR + +LL H          HDH+ +
Sbjct: 12  PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71

Query: 71  NVRQRLIERMASE-SVALLSDAGTPLISDPGYKLVRDARAAGRKITTLPGPSAAIAALTL 129
              Q L++++ S  S+AL+SDAGTPLISDPGY LV   R AG K+  LPGP A I AL+ 
Sbjct: 72  QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131

Query: 130 SGLPTDRFLFMGFLPNKAKARGDVLAEVVALRATLVFYESGPRLSDSLAAMAAAL-GDRE 188
           SGLP+D F F GFLP K+KAR D L E+  +  T +FYES  R+ +SL  M   L G+RE
Sbjct: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191

Query: 189 AAVSREISKTFEETATGTLTELSARYA--DAPPKGEIVVIVGPPGEAPPASAEDADAALR 246
             ++RE++KTFE      L EL    A  D   KGE+V++V    +A      D      
Sbjct: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQLPDEALRTL 251

Query: 247 EALTR-LPVSKAAGEVAKKLGLDRRTLYDRANELKGE 282
             LT+ LP+ KAA  VA+   L +  LY    E  GE
Sbjct: 252 TILTKELPLKKAAALVAEIHQLKKNALYKWGLENLGE 288