Pairwise Alignments

Query, 191 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 8   DATLAAQALAGRQAAYGALMRRHRDAVYRLARGHVDDADAAMDIVQESFVAAFASLARYD 67
           D  L  +   G + A+  L+ R+++ V  L   +V ++    D+ QE+F+ A+ ++  + 
Sbjct: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66

Query: 68  GRRPFRGWIARITIN--KCHDWARRRAVRRFFSFARPIE--DAAHVADAAPDPEQEAGSR 123
           G   F  W+ RI +N  K H  A+ R        A   E  +         +PE    S+
Sbjct: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126

Query: 124 AGIARIEAAVAALPVALREVILLRGIEGMSQAEVAQILGVTEKAVETRLYRARRQLQEVL 183
                +  A+ ALP  L+  + LR ++G+S  E+A+++      V +R++RAR  +++ +
Sbjct: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186

Query: 184 R 184
           +
Sbjct: 187 K 187