Pairwise Alignments

Query, 191 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 19  RQAAYGALMRRHRDAVYRLARGHVDDADAAMDIVQESFVAAFASLARYDGRRPFRGWIAR 78
           RQ  Y AL+R +   +YR A     D   A D+VQE+ + A+ SL      +  + W+  
Sbjct: 23  RQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLIT 82

Query: 79  ITINKCHDWARRRAVRRFFSFARPIEDAAHVADAAPDPEQEAGSRAGIARIEAAVAALPV 138
           I         RR   RRF    R   D   + D   + +           ++  +  L V
Sbjct: 83  IL--------RRENARRF---ERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDV 131

Query: 139 ALREVILLRGIEGMSQAEVAQILGVTEKAVETRLYRARRQLQEVLRESD 187
             RE++ L+ + G S  E+A IL + +  V TRL+RAR QL+E++  S+
Sbjct: 132 EYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE 180