Pairwise Alignments

Query, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (256), Expect = 1e-26
 Identities = 89/375 (23%), Positives = 162/375 (43%), Gaps = 24/375 (6%)

Query: 20  LKKIGIGAAVVALAVVGVGVASRISATNELRETAADASVPTVAVVKPTMNGEGNDLVLP- 78
           +KK      ++A+ + G  +   +    ++ E  A+   P   V   T N      V+  
Sbjct: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60

Query: 79  -GNVQAYNSAAIYARTNGYVRRWLADIGDRVRAGQPLAVLDAPDLDQQVAAAQADYQTAL 137
            G ++      +   T G + +   + G +V   QPL +LD+       A  +A+ ++  
Sbjct: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-------AVERANLKSTE 113

Query: 138 ANQRLAETTSKRWSAMLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTRL 197
           A    A+   +R+  + A+ ++S++  DE      A +A       +++ LKA      +
Sbjct: 114 ARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSA-------DIESLKATIARREI 166

Query: 198 AAPFDGVVTSRSAQIGALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVRPGMGATL 257
            APF GV+  R+  +G  +  G      +  + D   MR+   VPQ   + +       +
Sbjct: 167 KAPFAGVIGIRNVFLGQYLQPGT----DIVRLEDTSVMRLRFTVPQRDISRISLDQEVDI 222

Query: 258 TLPEYPGRSFNATLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNG 317
            +  YP  SF  ++++   AV  QSG + VQ    N DG L+ G FA+ +  +   + N 
Sbjct: 223 FVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLE-NQ 281

Query: 318 MTLPGSAILYSNNGPSVAVVGADN---RITMKPVAIARDEGATVQIASGLSPNDRIVDTP 374
           +TLP +AI Y+  G +V +V  +N   R+    V +     +   I  G+ P D +V T 
Sbjct: 282 VTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTG 341

Query: 375 PDAIRTGDTVKVQAS 389
              +  G  V++  S
Sbjct: 342 QVRLSNGAKVRIVES 356