Pairwise Alignments

Query, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 394 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  102 bits (254), Expect = 2e-26
 Identities = 99/381 (25%), Positives = 166/381 (43%), Gaps = 26/381 (6%)

Query: 39  VASRISATNELRETAADASVPTVAVVKPTMNGEGNDLVLPGNVQAYNSAA----IYARTN 94
           V + ++A    +E A   + P   V   T+     D+ +     A  + +    + AR  
Sbjct: 17  VVAMMAALTGCKEEAQKGAPPAPLVEVKTITA--GDVPVTSEYVAQTAGSREVEVRARVT 74

Query: 95  GYVRRWLADIGDRVRAGQPLAVLDAPDLDQQVAAAQADYQTALANQRL--AETTSKRWSA 152
           G + +     G  ++ G  +  +D PD   + A  QA+ Q A    RL  A     R  A
Sbjct: 75  GILLKRTYTEGRPIKKGALMFEID-PDT-YKAALDQAEGQLAQEQARLSRARLERDRVLA 132

Query: 153 MLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTRLAAPFDGVVTSRSAQI 212
           + A +AVS+++ D+   +  + +A    A A VK  +   G+TR+ AP  G VTS+  + 
Sbjct: 133 LYADNAVSQKDRDDAVTEFDSASAAVKVAQARVKEARINLGYTRVDAPIAG-VTSKEVRS 191

Query: 213 GALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVR------------PGMGATLTLP 260
              +VS +A    L T++ +  + +   VP    +S+R             G+   LTLP
Sbjct: 192 EGSLVSPSADGSLLTTITRLDPLYVNFGVPGTEMSSLRRLIESGKAEMPADGLAVQLTLP 251

Query: 261 EYPGRSFNATLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNGMTL 320
           +    +    +T +   VD  +G V  + +  NP+  + PG F +    +G    N + +
Sbjct: 252 DGTVYARTGKITFTDKQVDQTTGTVRSRAEFPNPEAEVMPGQFVRAKV-LGLVLKNAIIV 310

Query: 321 PGSAILYSNNGPSVAVVGADNRITMKPVAIARDEGATVQIASGLSPNDRIVDTPPDAIRT 380
           P  A+L +  GP V VVG+D    ++PV +A   G    I  GLS  + I+       R 
Sbjct: 311 PQRAVLETQKGPMVYVVGSDMVANLRPVVVAEALGGDYLIEKGLSGGETIIVEGIIKARP 370

Query: 381 GDTVKVQASAPAGGKGATHAR 401
           G  V+V  + PA G     A+
Sbjct: 371 GQPVRV--AQPANGAAPAAAQ 389