Pairwise Alignments
Query, 1064 a.a., CzcABC family efflux RND transporter, transmembrane protein from Sphingobium sp. HT1-2
Subject, 1075 a.a., heavy metal efflux pump, CzcA family (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 335 bits (858), Expect = 1e-95
Identities = 293/1105 (26%), Positives = 486/1105 (43%), Gaps = 124/1105 (11%)
Query: 16 IVMAILIAIVGILSAARTP---VDMFPNIRIPVIAVAFQYAGLSPEDMSGRIVGPYERVL 72
+V+A+L A+ S A P +D FP++ + + + GL+ E++ I P E +
Sbjct: 16 VVLALLAAVAA--SVAMLPKLNLDAFPDVTNVQVTINTEAEGLAAEEVEKLISYPVESAM 73
Query: 73 TTTVNDIEHIESQSLQGIGVIKIYFQPGADIRTATAQVTSISQTVLRQMPPGVTPPLILN 132
+ + + S S G+ ++ + F G DI A QV Q +P GV P I
Sbjct: 74 YA-LPAVTEVRSLSRTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREMIPSGVGVPEIGP 132
Query: 133 YSASTVPILQLALSGK---GLSEQQLFDLGQNQIRPQLVTIPGLAMPFPSGGKQRQVQID 189
++ I Q L G++ +L L ++ L+ + G+ GG+ RQ Q+
Sbjct: 133 NTSGLGQIYQYILRADPSAGINAAELRSLNDYLVKLILMPVGGVTDVLSFGGEVRQYQVQ 192
Query: 190 LNPLALQSKGLSAQDVGNAIAAQNQINPAGFVKIGATQYSVR----LNNAPESIAALNDL 245
++P L++ GLS V A+ + N+ F+ G Q VR L +A++ +
Sbjct: 193 VDPNKLRAYGLSMAQVSEALESNNRNAGGWFMDQGQEQLVVRGYGMLPAGEAGLASIAQI 252
Query: 246 PVKVVNGATIYMRDVAYV---------------RDGAGPQQNIVHVEGSRSALLTVLKNG 290
P+ V G + + D+A V RD AG Q + V VLK
Sbjct: 253 PLTEVRGTPVRVGDIAKVDFGSEIRVGAVTMTRRDEAGQAQALGEVVAG-----VVLKRM 307
Query: 291 STSTLAIVDGVKQALPKISATLPDTLKILPIGDQSLFVKAAVEGVIHEGAIAAALTSLMI 350
+T A +D + + I LP + DQ+ V AV V +A +++
Sbjct: 308 GANTKATIDDIDARINLIEQALPKGVSFEVFYDQADLVDKAVATVRDALLMAFVFIVVIL 367
Query: 351 LLFLGSWRSTVIIALSIPLAILAAIAALAMFGQTLNVMTLGGLALAVGILVDDATVTIEN 410
LFL + R+T+++ LSIP++I A+ ++ +G + N+M+LGGLA+A+G+LVD + V +EN
Sbjct: 368 ALFLVNIRATLLVLLSIPVSIGLALMVMSYYGLSANLMSLGGLAVAIGMLVDGSVVMVEN 427
Query: 411 INWHLEQGK-----------------------GVIEA------------ILDGAAQIVTP 435
I HL Q G + A I+ A ++ +P
Sbjct: 428 IFKHLTQPDRRHLTQARARADGEADPYHGDEDGGVNADDDDHQGNMAVRIMLAAKEVCSP 487
Query: 436 AFVSLLCICIVFVPMFFLPGVAGFLFVPMALSVVFAMIASFILSRTLVPTMAMYLLKPHH 495
F + I +VF P+F L GV G LF PMA+S++ AMI++ +++ VP +A+YL K
Sbjct: 488 IFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALIAVPALAVYLFKRGV 547
Query: 496 VGDEDEHLAGTATSRNPLVSFQRGFEYRFEKVRTSYVGMLHRALGARKPFLIGFMAVVVL 555
V E L + +Y +L L K ++ + + V+
Sbjct: 548 VLKESVIL---------------------RPLDNAYRKLLSATLARPKMVVLSAVIMFVM 586
Query: 556 SFGLLPFLGSNFFPSVDSGQIAMHIRVP----------VGARIEDTAARFDQIGREVRKI 605
S LLP LG+ F P ++ G I + + + V ++E +F ++ + +I
Sbjct: 587 SMALLPRLGTEFVPELEEGTINLRVTLAPTASLGTSLDVAPKLEALLLQFPEVEYALSRI 646
Query: 606 IPADQLGSITDNIGLPVSSINTVYNNSGTIGPQDGDMLIALNKGHRPTDEFVSQLRRELP 665
A +LG + PVS+I Q +AL + L E
Sbjct: 647 -GAPELGGDPE----PVSNIEIYIGLKPIEEWQSASSRLALQR-----------LMEEKL 690
Query: 666 RRFPGTTFAFL-PADITSQILNFGAPAPIDIQIAGKDAEANRAYAQKLLAKITTIPGLAD 724
FPG F P L G A + I++ G D Q L + IPG D
Sbjct: 691 SVFPGLLLTFSQPIATRVDELLSGVKAQLAIKLFGPDLAVLSDKGQVLTDLVAKIPGAVD 750
Query: 725 ARIQQPGRAPQLDVDVDRSRVGQYGLTERDVTTSLASSLAGTSQTAPVFFVNPQNGVQYP 784
++Q QL V DRS++ +YG++ V T ++ + G S + +Y
Sbjct: 751 VSLEQVSGEAQLVVRPDRSQLARYGISVDQVMTLVSQGIGGASAGQVI-----DGNARYD 805
Query: 785 VVAQAPEYLVGSMSDLSNVPVSGAGASAVQPLGGLATIVRSNTVPVVSHYNIAPVLDIFA 844
+ + S + ++ +SG + V+ LG +A++ P + ++ + + A
Sbjct: 806 INLRLAAEFRSSPDVIKDLLLSGTNGAIVR-LGEVASVEVEMAPPNIRRDDVQRRVVVQA 864
Query: 845 TTQGRDLGAVAGDIDRAIKSLKAEEPKGSTITIRGQYATMNTAFSGLGFGLAGAIILIYL 904
GRD+G++ DI + KA+ P G T+ + GQY A L + +I LI L
Sbjct: 865 NVAGRDMGSIVNDIYALVP--KADLPAGYTVIVGGQYENQQRAQQKLMLVVPVSIALIAL 922
Query: 905 LIVVNFQSWVDPFVIITALPAALAGIIWMLFMTGTTLSVPALTGAIMCMGVATANSILVV 964
L+ +F + +I+ +P AL G I LF++GT LSVP+ G I GVA N +++V
Sbjct: 923 LLYFSFGAVKQVLLIMANVPLALIGGIVALFVSGTYLSVPSSIGFITLFGVAVLNGVVLV 982
Query: 965 SFARERLAELGDATKAALEAGMVRFRPVLMTALAMIIGMGPMALGLGEGGEQNAPLGRAV 1024
+R + E + R RPVLMTAL +G+ P+ + G G E PL +
Sbjct: 983 DSINQRRQSGESLYDSVYEGTVGRLRPVLMTALTSALGLIPILVSSGVGSEIQKPLAVVI 1042
Query: 1025 VGGLICATIATLFFVPTVFAFVHSR 1049
+GGL +T TL +PT++ +++ R
Sbjct: 1043 IGGLFSSTALTLLVLPTLYRWLYRR 1067
Score = 90.5 bits (223), Expect = 6e-22
Identities = 116/513 (22%), Positives = 229/513 (44%), Gaps = 35/513 (6%)
Query: 4 IVKVALHRPLTFIVMAILIAIVGILSAARTPVDMFPNIRIPVIAVAFQYAGLSPEDMSGR 63
++ L RP ++ A+++ ++ + R + P + I + A + S
Sbjct: 565 LLSATLARPKMVVLSAVIMFVMSMALLPRLGTEFVPELEEGTINLRVTLAPTASLGTS-L 623
Query: 64 IVGPYERVLTTTVNDIEH----IESQSLQG----IGVIKIYF--QPGADIRTATAQVTSI 113
V P L ++E+ I + L G + I+IY +P + ++A+++ +
Sbjct: 624 DVAPKLEALLLQFPEVEYALSRIGAPELGGDPEPVSNIEIYIGLKPIEEWQSASSR---L 680
Query: 114 SQTVLRQMPPGVTPPLILNYSASTVPILQLALSG-KGLSEQQLF--DLGQNQIRPQLVT- 169
+ L + V P L+L +S + LSG K +LF DL + Q++T
Sbjct: 681 ALQRLMEEKLSVFPGLLLTFSQPIATRVDELLSGVKAQLAIKLFGPDLAVLSDKGQVLTD 740
Query: 170 ----IPG---LAMPFPSGGKQRQVQIDLNPLALQSKGLSAQDVGNAIAAQNQINPAGFVK 222
IPG +++ SG Q V+ D + LA G+S V ++ AG V
Sbjct: 741 LVAKIPGAVDVSLEQVSGEAQLVVRPDRSQLARY--GISVDQVMTLVSQGIGGASAGQVI 798
Query: 223 IGATQYSVRLNNAPE---SIAALNDLPVKVVNGATIYMRDVAYVRDGAGPQQNIVHVEGS 279
G +Y + L A E S + DL + NGA + + +VA V P NI +
Sbjct: 799 DGNARYDINLRLAAEFRSSPDVIKDLLLSGTNGAIVRLGEVASVEVEMAPP-NIRRDDVQ 857
Query: 280 RSALLTVLKNGSTSTLAIVDGVKQALPKISATLPDTLKILPIGDQSLFVKAAVEGVIHEG 339
R ++ G +IV+ + +PK A LP ++ +G Q + A + ++
Sbjct: 858 RRVVVQANVAGRDMG-SIVNDIYALVPK--ADLPAGYTVI-VGGQYENQQRAQQKLMLVV 913
Query: 340 AIAAALTSLMILLFLGSWRSTVIIALSIPLAILAAIAALAMFGQTLNVMTLGGLALAVGI 399
++ AL +L++ G+ + ++I ++PLA++ I AL + G L+V + G G+
Sbjct: 914 PVSIALIALLLYFSFGAVKQVLLIMANVPLALIGGIVALFVSGTYLSVPSSIGFITLFGV 973
Query: 400 LVDDATVTIENINWHLEQGKGVIEAILDGAAQIVTPAFVSLLCICIVFVPMFFLPGVAGF 459
V + V +++IN + G+ + +++ +G + P ++ L + +P+ GV
Sbjct: 974 AVLNGVVLVDSINQRRQSGESLYDSVYEGTVGRLRPVLMTALTSALGLIPILVSSGVGSE 1033
Query: 460 LFVPMALSVVFAMIASFILSRTLVPTMAMYLLK 492
+ P+A+ ++ + +S L+ ++PT+ +L +
Sbjct: 1034 IQKPLAVVIIGGLFSSTALTLLVLPTLYRWLYR 1066