Pairwise Alignments

Query, 301 a.a., Mobile element protein from Sphingobium sp. HT1-2

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (312), Expect = 2e-33
 Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 7/235 (2%)

Query: 55  VMRVFAENFGVYGVRKVWRQMNREGFAVARCTIERLMRDLGLQGVIRGKPVRTTISNKAA 114
           V ++F ++ G  G R++ +++ +EG+ V R  + ++M  L L+   R    + T   K +
Sbjct: 30  VRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCA-YKVTTQRKHS 88

Query: 115 PCPLDHV-NRQFHAPAPNMLWVSDFTYVATWAGFVYVAFVIDVYARYIVGWRVSRTAHAS 173
               D++ N  F+  + N +W  D TY+ T  G++Y+A V+D+Y+R IVGWR+ +     
Sbjct: 89  DAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTD 148

Query: 174 FVLDALEQAIHERRPVHRGGLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSVGDSYDNAL 233
            +  AL +A + R+P    GL+ HSDRGSQY S ++   L+  GI  S+G VG  +DNA+
Sbjct: 149 LISKALIKAYNLRQPAR--GLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAV 206

Query: 234 AETINGLYKAEVIHR-RGPWRSFEAVEYATLEWVDWFNNRRLLEPIGNIPPAEAE 287
            E   G  K + I +   P R F  ++     ++ ++N  RL     ++ P E E
Sbjct: 207 VERFFGSLKHDWIFKVAQPTREF--MKQDVTAYIKYYNLERLHSANNDLSPVEFE 259