Pairwise Alignments

Query, 375 a.a., Inner membrane transport permease YhhJ from Sphingobium sp. HT1-2

Subject, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (248), Expect = 8e-26
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 34/373 (9%)

Query: 13  VKELWSLWRDPIMLVLILFVFTVSIYTSANSKPETLHNAAIAIVDEDESPLSQRIVAAFY 72
           VKE   L RD I   +++ +  + +     +    + N  I +VD+ +S  S+ +V +  
Sbjct: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71

Query: 73  PPQFTLPRM--IAPAQIDPGMDAGDFTFVLHIPHGF-QRDVLAGRTAEIQLNTDATRMSQ 129
             Q    +   +   + +  + +GD    L +P     R        +  ++   T ++ 
Sbjct: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTMIAG 131

Query: 130 AFSGSSY----------VQQIA-TAEVNEFVNRYRANSVPKVDLAVRARFNPTLNHTWFG 178
           A  G             +Q +  T E+    N  R ++V  V                 G
Sbjct: 132 ALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVP----------------G 175

Query: 179 ALAQIINQIAMLSIILTGAALIREREHGTIEHLLVMPVTPFEIMLSKVWSMGLVVLLASS 238
            L  I+    M  I+ T AA++RERE G +E L+  PV   E+M+ K+     V L+  +
Sbjct: 176 LLGVILT---MTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVA 232

Query: 239 LSINLVVQGLMHVPVAGSLALFFAGAALVLFSTTSMGIFLATLARNMPQFGMLMILVLLP 298
           + + L    +  VP+ G+L+    G  L + ++ ++G+ ++T+A    Q   + + +LLP
Sbjct: 233 IILGLG-HFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLP 291

Query: 299 LQMLSGGTTPRESMPKLVQDVMLFAPTTHFVELGQAILFRGAGIGVVWPQFAATAAIGIA 358
             +LSG   P E MP   Q +    P THF+ L + I+ RGA +  +W      A   + 
Sbjct: 292 SILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLF 351

Query: 359 FFLIALTRFRRTI 371
             ++A  RF++++
Sbjct: 352 GLMLAALRFKKSL 364