Pairwise Alignments

Query, 175 a.a., Transposase A from transposon Tn554 from Sphingobium sp. HT1-2

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 22/159 (13%)

Query: 28  KLMLLLTRKLGLRPIEIANMQSDWFCADMTLRIPQGSTKRQGS----RSLPVNIEILDAL 83
           K ML L    GLR  E+ ++  +    +M+LR  QG  +  G     R +P+    ++ +
Sbjct: 140 KAMLELLYATGLRVTELVSLTME----NMSLR--QGVVRVMGKGGKERLVPMGENAIEWI 193

Query: 84  R--------LHMGNKWGQ-VFTNAQGEAFTANGISEAMRRIYRLSGI---KGSAYCGRRT 131
                    L +G +    VF +++G+  T       ++    ++GI   K S +  R  
Sbjct: 194 ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHA 253

Query: 132 AATNMVDKGISIRVVQEFLGHRNLATTEKYCAVTPNMLR 170
            AT++++ G  +RVVQ  LGH +L+TT+ Y  V    L+
Sbjct: 254 FATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLK 292