Pairwise Alignments

Query, 403 a.a., Lipopolysaccharide export system permease protein LptF from Sphingobium sp. HT1-2

Subject, 370 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 69/343 (20%), Positives = 141/343 (41%), Gaps = 16/343 (4%)

Query: 7   RYLARLIALPLLGTLVIAAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMLPEYLSLGI 66
           RYL R +    +  L +   + +    + +    +    P S++  ++   LP  + L +
Sbjct: 5   RYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVL 64

Query: 67  PIGLMLGILLAFRKLATSSELDVMRAVGLSYGRLLRVPYMFAFALALLNLGIVGWVQPLS 126
           P+ L LGIL+A  ++   +E+ ++  VG+S   + RV  + A    L    +  +V P +
Sbjct: 65  PLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 127 RHAYEALRFELRSGALGASIKVGEF-TSLGKRMTLRIERSLDEGRNLRGIFVRAVGKDGQ 185
                 +  + +S A  A++  G F  S   R  L +ER + +   L  +FV  +     
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVER-IGKDNELEKVFVAQLPDPND 183

Query: 186 SVAVT---AAQGAFLATDDPDTIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIE 242
            + +T    A+G  +  D   +   +L DGV    +P+ K  +++ F  + + I   Q++
Sbjct: 184 EIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVD 243

Query: 243 NFRGRDVDREKTLPELFSMGRDPATPTKLRNEVRSNFHFRMVEVVMMMLLPMAALAFAIP 302
             R +       L EL  +    A          + FH+R+   + + ++ + A+  A  
Sbjct: 244 ERRRK--LSALPLGELLKIDGPEAV---------AEFHWRLAIPLAIPIMTLIAVPLARV 292

Query: 303 PKRSTSALGVFLSIVFIVTYHKINQYGESIGSLGKIDPIIALW 345
             R      +  +++  + Y  +   G      G I   + +W
Sbjct: 293 NVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPLYLGMW 335