Pairwise Alignments

Query, 426 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 309 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 30/265 (11%)

Query: 103 RAGMTCQEAWDRYISGLKAGTNLHGKARNKPRTIIEKEGMWTRLWAEEIGGTLMDEVTEE 162
           RA MT  +AW  Y     A  + +   R+     IE            IG   MDEV   
Sbjct: 22  RANMTVGDAWTLYCRDWLASKSSYKTDRSLYLKHIEPV----------IGSRRMDEVKTV 71

Query: 163 ALYDVIQGLRD---DGYMGAANSTTRYIKAFFRWGKLEKRATGLRTNPAEDLPVSQLQ-A 218
            + ++++ + D      + A     R  +    WG            P + + V ++  A
Sbjct: 72  DINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHG------PTPTDGVVVKRVDNA 125

Query: 219 RDRYLTENEIRYLLTALQAEDQIWMDAYRLALMTGQRKNEIFGALRSEVDIGARHITISA 278
           R R+L+  E R+LL  L      + D  R++L  G R  EIF      V+I AR I +  
Sbjct: 126 RMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVIAVMD 185

Query: 279 DRMKHNRAHVVPLTQQAWEIVERRLKA-TTSRYLFAAGDGDNHLTGFSKRQAAIKAAVVK 337
            +   + + +  +T+    ++ R +       ++F    G+    G           V  
Sbjct: 186 AK---SGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGE----GMRTINQTFVRVVRD 238

Query: 338 LAAADGIEVAHWS--FHDLRRSVST 360
           L   DG++ A     FH LR + ++
Sbjct: 239 LELNDGVDDARHKVVFHTLRHTFAS 263