Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (256), Expect = 9e-27
 Identities = 86/347 (24%), Positives = 156/347 (44%), Gaps = 14/347 (4%)

Query: 2   RSTLPVILVALCLAGCGGEKEKKARP---PALVEAVAIAPTRFTDNVEAVGTALANEQVI 58
           ++ L   + +  L GCG E      P   PA +  V++    F+    A  T  A ++ +
Sbjct: 3   KTLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPA--TTAAGDRAV 60

Query: 59  LSAPVTERIDVLNFTDGGFVSKGQVIARMAVGQEKAELAAAEATALQADQQLKRIQALKS 118
           L+  V  ++  ++   G  V KG+V+AR+   +       A A    AD Q +R Q L+ 
Sbjct: 61  LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQ 120

Query: 119 RGFATGATVEQQIALANSARANADLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAI 178
               +    +Q  A  NSA+A  + A+A +    + AP+ G +SL        + A   +
Sbjct: 121 DKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGV 180

Query: 179 ATVSDISRIKLDFTVPETRLSMI-REGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAV 237
             +     +K+ F +P+  L+   R+G+    +  ++P+R +      ID   D  TR+ 
Sbjct: 181 MNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSY 240

Query: 238 RVRAIMPNP-DKALKPGMLLTVSVFSRERQSLGVPELAVIGDGDERFVFVLD--GRTAKR 294
           +V  +M  P D  + PGM   VS+ +    +  +P  A+  +   ++V+ +D  G  +K 
Sbjct: 241 KVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSK- 299

Query: 295 TKVETGIRQNGLVEILGGVKAGQQIVTEGVVKLTDGAPVRLAGDKRG 341
                 +  N   ++L G+  G +I+  GV  +T+G  VR    +RG
Sbjct: 300 ----AAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKERG 342