Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (411), Expect = 9e-45
 Identities = 105/350 (30%), Positives = 180/350 (51%), Gaps = 9/350 (2%)

Query: 3   STLPVILVALCLAGCGGEKEKKARPPAL-VEAVAIAPTRFTDNVEAVGTALANEQVILSA 61
           + L + L+ L +       ++  +PPA+ V   ++   + + ++  VG   A + V ++A
Sbjct: 5   TVLSLTLLTLLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAA 64

Query: 62  PVTERIDVLNFTDGGFVSKGQVIARMAVGQEKAELAAAEATALQADQQLK--RIQALKSR 119
            V  ++D++       V KGQ++ ++    +KA+ A  EA A   D+Q K    + L  R
Sbjct: 65  EVAGKVDMIAVQANQQVKKGQILIKL--DDDKAQAALVEAKAYLQDEQRKLTEYERLLKR 122

Query: 120 GFATGATVEQQIALANSARANADLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIA 179
              T   ++ Q A     +A  + A+A + D  I APF G V     S G  ++AG+ + 
Sbjct: 123 NAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELL 182

Query: 180 TVSDISRIKLDFTVPETRLSMIREGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRV 239
           T+ ++S ++LD  +PE  L  + +GM ++  S AWP+  F G++  +D  I+  T  +RV
Sbjct: 183 TLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRV 242

Query: 240 RAIMPNPDKALKPGMLLTVSVFSRERQSLGVPELAVIGDGDERFVFVL-DGRTAKRTKVE 298
           R   PNPD+ LKPGML++  +      +  +P  A+   G +RFV+V+ +   AKR +V 
Sbjct: 243 RVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVS 302

Query: 299 TGIRQNGLVEILGGVKAGQQIVTEGVVKLTDGA---PVRLAGDKRGDDDK 345
            G R    V I  G++ G++IV +G+V + D A    V + G     DDK
Sbjct: 303 LGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVEGRPLKKDDK 352