Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (332), Expect = 1e-35
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 7/318 (2%)

Query: 24  KARPPALVEAVAIAPTRFTDNVEAVGTALANEQVILSAPVTERIDVLNFTDGGFVSKGQV 83
           +  P   V  V   P  +   +EA+G    N+ V L+      ID + F  G  V+K Q 
Sbjct: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96

Query: 84  IARMAVGQEKAELAAAEATALQADQQLKRIQALKSRGFATGATVEQQIALANSARANADL 143
           +  +    E+A L + EA    A  + +R + L ++G  +  + ++  A   +  A+ + 
Sbjct: 97  LVLLDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIES 156

Query: 144 ARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIATVSDISRIKLDFTVPETRLSMIRE 203
            +A I  R I+APF+G + +R V  G  +  GT I  + D S ++L FTVP+  +S I  
Sbjct: 157 LKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISL 216

Query: 204 GMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRVRAIMPNPDKALKPGMLLTVS-VFS 262
              +     A+P   F G+I+ I+P +   +  ++V+A +PN D  L+ GM    + +  
Sbjct: 217 DQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP 276

Query: 263 RERQSLGVPELAVIGD--GDERFVFVLDGRTAKRTK---VETGIRQNGLVEILGGVKAGQ 317
           +    + +P+ A+     GD  ++ V +    KR +   V+ G R   +  IL GVK G 
Sbjct: 277 KLENQVTLPQTAITYTLYGDNVYI-VSEENGEKRVQQHVVKVGERSESIAHILEGVKPGD 335

Query: 318 QIVTEGVVKLTDGAPVRL 335
            +VT G V+L++GA VR+
Sbjct: 336 VVVTTGQVRLSNGAKVRI 353