Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 381 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  157 bits (396), Expect = 6e-43
 Identities = 108/322 (33%), Positives = 153/322 (47%), Gaps = 10/322 (3%)

Query: 25  ARPPALVEAVAIAPTR---FTDNVEAVGTALANEQVILSAPVTERIDVLNFTDGGFVSKG 81
           A  P  V  V +   R   + D + AVGT  A   V + A V   ++ ++F  G  V KG
Sbjct: 36  ANQPEPVITVTVEDARAEDWQDTIPAVGTLRAINGVTVGAAVAGIVETISFESGQRVKKG 95

Query: 82  QVIARMAVGQEKAELAAAEATALQADQQLKRIQALKSRGFATGATVEQQIALANSARANA 141
            ++ R+  G+E+ EL A  A A  +     R + L      T A ++   A      A  
Sbjct: 96  DLLVRLDDGEERGELDAVRAQAELSRITAGRARRLVQSAAGTRANLDDAEAQLRVNLATI 155

Query: 142 DLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIATVSDISRIKLDFTVPETRLSMI 201
               A +  +T+ APF G + +R V  G  +TAG  +  + D+S I  DF+V +  L  +
Sbjct: 156 GQLEARVAKKTVTAPFDGVLGVRAVDLGEYVTAGQTLVDLQDLSVILADFSVSQKDLGRV 215

Query: 202 REGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRVRAIMPNPDKALKPGMLLTVSVF 261
             G  +   + AWP R F GTI  I P +D  T    V     NPD AL+PGM   ++V 
Sbjct: 216 AVGAKLTLTTDAWPGRAFEGTIKAIAPKVDANTGMAVVEGRFDNPDGALRPGMFAKLAVL 275

Query: 262 SRERQS-LGVPELAVIGD--GDERFVFVLDGRTAK----RTKVETGIRQNGLVEILGGVK 314
             ERQS + VP  AV     GD  +V    G   K    R  V TG+R+   V +  G+ 
Sbjct: 276 RAERQSVVTVPATAVTYSLHGDALYVLKEAGEDGKVRVDRITVTTGVRRGDRVVVTAGLS 335

Query: 315 AGQQIVTEGVVKLTDGAPVRLA 336
           AGQ++VT G VKL DG+ V +A
Sbjct: 336 AGQRVVTSGQVKLNDGSAVAVA 357