Pairwise Alignments

Query, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  800 bits (2066), Expect = 0.0
 Identities = 429/1034 (41%), Positives = 651/1034 (62%), Gaps = 14/1034 (1%)

Query: 1    MQLSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVE 60
            M LSD+SV+RPV + V+++L+C+ G+V +  L+VRE PD + P+VSV T Y GA+A+++E
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 61   TRITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLP 120
            ++IT  +ED +AG+ GI  ITS S++G S I + F+   D+++  +D+RD V    + LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 121  EDALAPEIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGEA 180
            E+A  P++ K +   ++ +++  S       Q++DY++R + DRF+ I GV+ V + G  
Sbjct: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180

Query: 181  RPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQF 240
                 +    E +A  G+  +D+  AL  +N+E P G+  +     ++R  R + + + F
Sbjct: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240

Query: 241  AQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQKA 300
              LVV R  DG  + L DVA +  GAEN  S+F+S+    + +GI+ QS AN LEVA++ 
Sbjct: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300

Query: 301  KALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRATI 360
               + +++  LPKG ++AI  D ++FIER+I  VY TL     LVILV+++F+G +RAT+
Sbjct: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360

Query: 361  VPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDDP 420
            +PAVTVP+ L++     +  G SINL+TL+A +L+IGLVVDDAIVV+EN++H +E+G+ P
Sbjct: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420

Query: 421  LVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISLS 480
            L+AAY GTR+VGFA+I+TTLV+  VF+P+ F+ G  GLLF E ++ +  A+ FS  I+L+
Sbjct: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480

Query: 481  LAPMLCSKLLK-NAERGRLARWVDDRFQRIEHGY----GRWLDWTLKKPLMPLLGVAIFL 535
            L P+L SKLLK N + GR  + +D  F R+E GY     R + W    P++    +A  +
Sbjct: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVV----IAACI 536

Query: 536  GVAFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRKDGTLQN 595
            G ++ L   +PA+L P+ED GV+ + V   + T ++RM A M  +E  L  L   G L++
Sbjct: 537  GGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKS 596

Query: 596  LVIRTPGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVRGNAAP-RS 654
              I++P   G   D   G VI  L  W DRT+T  E  + + K +A  P VR    P   
Sbjct: 597  FSIQSPAFGGNAGD-QTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVR--VFPFMP 653

Query: 655  GLGRGRGLPVNIVLAGSTYEGLVAARDRIMLAAASYPGLINLDSDYKETKPQMRIETDLQ 714
            G   G   PV  VL GS Y  L    +++   A   P +   D DY E  P++ +  D Q
Sbjct: 654  GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQ 713

Query: 715  RAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLADLERIQVRSR 774
            RA +LG+SV  +S  L+ +LG ++VTT+V+RGEEY V ++ + +     ADL +I +R+ 
Sbjct: 714  RAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTA 773

Query: 775  RGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLEDQARQ-SPE 833
             G LV L  V  + EVA   +L  YNK +++T+TA L  G +LGQ L FL+ +A++  P 
Sbjct: 774  TGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPN 833

Query: 834  VLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVPLAVAGGA 893
             +++ Y GES+  +E   S+ IVF L +L+ YL+LAAQFESFI+P V++ TVP+ V GG 
Sbjct: 834  DISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGF 893

Query: 894  LGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGMEIAEAIREAAKRRLRP 953
            LGL + G  +N+YSQIG++ML+G+  KNGILIVEFANQLRD G+E  +AI +A+ RRLRP
Sbjct: 894  LGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRP 953

Query: 954  ILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFYSRVAKRTV 1013
            ILMT+  T+ G++PL++  GAG  +R ++G VI FG+  ATL+TL +IP  Y  ++  T 
Sbjct: 954  ILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQ 1013

Query: 1014 SPQTVGRKLDSALK 1027
            +P  V  +L+  L+
Sbjct: 1014 APGHVEAELNHELQ 1027