Pairwise Alignments

Query, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1037 a.a., Multidrug efflux pump subunit AcrB from Enterobacter sp. TBS_079

 Score =  562 bits (1448), Expect = e-164
 Identities = 344/1034 (33%), Positives = 561/1034 (54%), Gaps = 30/1034 (2%)

Query: 3    LSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVETR 62
            +++  + RP+F+ V+A+L+C+ G++   SL V +YPD  PP V V   Y GA+A  +E  
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGVLAITSLPVEQYPDLAPPNVRVTANYPGASAQTLENT 60

Query: 63   ITQQIEDAVAGVQGIQTITS-TSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLPE 121
            +TQ IE  + G+  +  ++S +S  G + + + F    D D A   V++++ S  + LP+
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 122  DALAPEIRKVDSDARSILFLAF-SRPGWSPIQ-ISDYLDRNIADRFAAIDGVARVTIGGE 179
                  +    +   +IL +AF S  G    Q I+DY+  NI D  + I+GV  +   G 
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRINGVGDIDAYG- 179

Query: 180  ARPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRF------ESKDQNQTLRVERP 233
            ++ S RIW + +KL +F +T  DV  A+++QN ++  G+       E +  N T+  +  
Sbjct: 180  SQYSMRIWLDPDKLNSFQMTATDVTDAIKSQNAQIAVGQLGGTPSVEKQALNATINSQSL 239

Query: 234  FATPDQFAQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANT 293
              TPDQF  + +   +DG +V+LGDVA +E GAE      R N   A G+GI   SGAN 
Sbjct: 240  LQTPDQFRNITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGNPASGLGIKLASGANE 299

Query: 294  LEVAQKAKALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFL 353
            +  A+     + EL    P G++  +  + + F++ +I++V  TL+EA  LV LV++LFL
Sbjct: 300  MATAKLVLDRLDELSNYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFL 359

Query: 354  GSVRATIVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHR 413
             + RAT++P + VP+ LL T AV++  G SIN LT+ A VLAIGL+VDDAIVV+ENV   
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERI 419

Query: 414  V-EQGDDPLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIG 472
            + E+G  P  A      Q+  A++   +V+ AVF+P+ F  G TG ++R+ +I +++A+ 
Sbjct: 420  MSEEGLSPRQATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMV 479

Query: 473  FSGFISLSLAPMLCSKLLKNAERGR------LARWVDDRFQRIEHGYGRWLDWTLKKPLM 526
             S  ++L L P LCS LLK   +G          W +  F R    Y   +   L + L 
Sbjct: 480  LSVLVALILTPALCSTLLKPLHKGEQHGQKGFFGWFNRMFNRNAARYESAVGKVLHRSLR 539

Query: 527  PLLGVAIFLGVAFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAF 586
             +L   + LG   +LF  LP    P ED G+   +V  P G    + +  ++K+E     
Sbjct: 540  WMLIYVVLLGGMVWLFLHLPTSFLPMEDRGMFTTSVQLPSGATQQQTLKVVEKVEQYFFT 599

Query: 587  LRKDGTLQ--NLVIRTPGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVI---- 640
              KD  +   + V   PGG G     N   +   L+ W++R   T   A II +      
Sbjct: 600  QEKDNVVSVFSTVGSGPGGNGQ----NVARMFVRLKDWDERDTKTGTAAAIIERATHAFT 655

Query: 641  -ADQPGVRGNAAPR-SGLGRGRGLPVNIV-LAGSTYEGLVAARDRIMLAAASYPGLINLD 697
              ++  V  ++ P  SGLG   G  + +   AG+ +  L+AARD+++  A     L  + 
Sbjct: 656  KINEARVFASSPPAISGLGSSAGFDMELQDHAGAGHTALMAARDKLLALAGKDADLTRVR 715

Query: 698  SDYKETKPQMRIETDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAER 757
             +  +  PQ++++ D ++A  LGVS++D++  LQ+  GS  V  ++DRG   +V VQ+  
Sbjct: 716  HNGLDDSPQLQVDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQSAA 775

Query: 758  DGRQTLADLERIQVRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSL 817
              R    D+ R  VR+  G +VP SA  +    +G  +L RYN   A+ +    APG S 
Sbjct: 776  PFRMLPNDINRWFVRNNAGGMVPFSAFASSHWESGSPRLERYNGYSAVEIVGEAAPGVST 835

Query: 818  GQGLAFLEDQARQSPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIH 877
            G  +  +E   +Q P    + +   S   R +G     ++ L++L+V+L LAA +ES+  
Sbjct: 836  GTAMDTMEKLVQQLPAGFGLEWTAMSYQERLSGAQAPALYALSLLVVFLCLAALYESWSV 895

Query: 878  PGVIIATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGM 937
            P  ++  VPL V G  L   + G   ++Y Q+G++ ++GL+AKN ILIVEFAN++  +G 
Sbjct: 896  PFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNAKGH 955

Query: 938  EIAEAIREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLIT 997
            E+  A   A ++RLRPILMTS+A V G +P+    GAG++++H++G  ++ G+  AT++ 
Sbjct: 956  ELMAATLHACRQRLRPILMTSLAFVFGVLPMATSTGAGSSSQHAVGTGVMGGMISATVLA 1015

Query: 998  LFLIPIFYSRVAKR 1011
            ++ +P+F+  V +R
Sbjct: 1016 IYFVPLFFVLVRRR 1029