Pairwise Alignments

Query, 309 a.a., Site-specific tyrosine recombinase XerD from Sphingobium sp. HT1-2

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  219 bits (558), Expect = 7e-62
 Identities = 141/309 (45%), Positives = 180/309 (58%), Gaps = 24/309 (7%)

Query: 5   AVLIDRFLEMMAAERGASRNTLLAYRTDLQGAGEIV-----GGLAVASQDTLGRLAGEWA 59
           AV  + FLEMM AERGA+R T+ AY  DL+     +      GL V+       LA   A
Sbjct: 19  AVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAA 78

Query: 60  P-LAASTVARKASALRAFYAFLEEEGLRADNPGAALPRPVTRRPLPKILSSQEVDSLFAL 118
             LA  + ARK S LR F+ FL  EG R D+P   L  P   RPLP++LS  EVD+L  +
Sbjct: 79  AGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALL-V 137

Query: 119 IAQRVETAHPAPLDLRLSALIELLYGSGLRATELVSLPRKALAVDRPFLIIRGKGARERL 178
            A+  E A      LR   L+ELLY +GLR +ELVSLP      D   +++RGKG +ERL
Sbjct: 138 AAEAGEGAR----GLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERL 193

Query: 179 VPISDRARAAVATWLAHVPAD-----------SLWLFPSG--KSHVSRIRLYQLVKQLAA 225
           VP+   ARAA+  WL   P               +LFPS   + H++R    +++ +LA 
Sbjct: 194 VPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELAL 253

Query: 226 AAGIAPERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVN 285
            AGI P RVSPHVLRH FA+H+L  GADLR +Q++LGHADI TTQIYTHV   RL  LV 
Sbjct: 254 RAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVR 313

Query: 286 SRHPLAGMQ 294
           + HPLA ++
Sbjct: 314 TAHPLARLK 322