Pairwise Alignments

Query, 524 a.a., Transcription termination protein NusA from Sphingobium sp. HT1-2

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella loihica PV-4

 Score =  378 bits (971), Expect = e-109
 Identities = 214/519 (41%), Positives = 316/519 (60%), Gaps = 28/519 (5%)

Query: 11  ELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGD---LRLWR 67
           E++ +A +V++EK + +  + EA+E A+  A + +Y  + ++R  +D  +G+    R W 
Sbjct: 4   EILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFRRWM 63

Query: 68  VVEVV-EVVEDYFKQVDLKQAAKLKKDAVVGDFIVDPLPAIDLGRIDAQSAKQVIFQKVR 126
           VVE   + +E+ F+++ L+ A     +  VG++I D + ++   RI  Q+AKQVI QKVR
Sbjct: 64  VVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQKVR 123

Query: 127 DAERERQFDEFKDRVGEIITGVVKSVEFGHVVVNLGR-AEGVIRRDQQIPREVVRVGDRI 185
           +AER +  D+F ++ GE+ITGVVK      VVV+LG  A+ V+ ++  I RE  R GDR+
Sbjct: 124 EAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGDRV 183

Query: 186 RSVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGVI 245
           R+++  VR E RG Q+FL+R  P+ + +LF  EVPEI D +I IM AARDPGSRAKI V 
Sbjct: 184 RALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIAVK 243

Query: 246 SRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVID 305
           S D  IDP+GACVGM+G+RVQAV  E+ GE++DI+ W ++ A FV+NA+ PA VA +++D
Sbjct: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303

Query: 306 EEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVSRSEMF 365
           E+   +++ V  D L+ AIGR GQNVRLA+QL+G  +++MT  D   K Q E      +F
Sbjct: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIVNLF 363

Query: 366 QNELDVDETLSQLLVAEGFGELEEVAYVSVEELAGIEGFDEDLAAELQSRAQEALDRREQ 425
            + LDVDE  +Q+L  EGF  LEEVAYV   EL  I+GFDE++   L+ RA+ A+  R  
Sbjct: 364 VSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAISTRAL 423

Query: 426 AAREERQALGVEDALADMPHLTEAMLVTLGKAGVKTLDDLADLATDELVQKKRVDQRRRK 485
           A+ E        + L  +  L   +   L   GV TL+DLA+   D+L++ +        
Sbjct: 424 ASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEE------- 476

Query: 486 SDSGNEDKGGILAAYGLTDEQGNEIIMAARAHWFEGEEA 524
                           LT+E+  E+IMAAR   + GEEA
Sbjct: 477 ----------------LTEEKAGELIMAARNICWFGEEA 499