Pairwise Alignments

Query, 341 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Sphingobium sp. HT1-2

Subject, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 80/333 (24%), Positives = 120/333 (36%), Gaps = 96/333 (28%)

Query: 3   GWIILDKPHGLGSTQAVSAVKRALRTQREVLGGTEKWKVGHGGTLDPLATGVLPIAIGEA 62
           G +++DKP G  S +  + V+  L             K GHGGTLDP  TG LP+A+G  
Sbjct: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLV----------KAGHGGTLDPKVTGALPVALGNT 80

Query: 63  TKLAGRMLDSDKIYDFTIAFGAQTDTLDLEGKVIAESEVRPTLAQLEAILPRFTGPIEQA 122
           TK         K Y   +      + +D+E                  I   FTG I Q 
Sbjct: 81  TKCVPIWHIPPKEYVCLMHLHDDAELVDIEN-----------------IFKEFTGRIHQR 123

Query: 123 PPAYSAILIDGQRAYDLARKGEQVEMKTRSVTIHELFLPGTGRGTASRSDGVEGQAPLDM 182
           PP  +A                 V+   R   I+E+ +                     +
Sbjct: 124 PPLKAA-----------------VKRSLRIRKIYEIEI---------------------L 145

Query: 183 TLEGQDRVGVPLHHASHGSPPRAGEELASVTLRAHVSKGTYIRSLARDIALALGTVGHVT 242
            ++G+D                       +  R     GTY+R L  D+  ALGT  H+ 
Sbjct: 146 EIDGRD-----------------------ILFRTKCQSGTYLRKLVDDMGEALGTSAHMQ 182

Query: 243 MLRRIKAGPFTLETAISL-DKLD------EAARGGDIGELMLPLTAGLDDIPALAVSPDE 295
            LRR  +GPF    A+ L D LD      E     ++ +++ PL  GL  +  + +    
Sbjct: 183 ELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKIIIKDSA 242

Query: 296 ALALRQGKMLMGKPHTGLLLAMLGDTPVALVES 328
             A+  G  L     + +    LG   V L+E+
Sbjct: 243 VDAVCHGATLYSSGISKIEKG-LGTDEVVLIET 274