Pairwise Alignments

Query, 341 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Sphingobium sp. HT1-2

Subject, 304 a.a., tRNA pseudouridine synthase B (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  139 bits (351), Expect = 7e-38
 Identities = 114/340 (33%), Positives = 160/340 (47%), Gaps = 69/340 (20%)

Query: 2   HGWIILDKPHGLGSTQAVSAVKRALRTQREVLGGTEKWKVGHGGTLDPLATGVLPIAIGE 61
           HG ++LDKP G  S Q +S VKR        LG   + K+GH GTLDP+A GVL + +G 
Sbjct: 6   HGLLVLDKPSGPSSAQCISKVKR--------LG---QKKIGHAGTLDPMAGGVLLVLLGH 54

Query: 62  ATKLAGR-MLDSDKIYDFTIAFGAQTDTLDLEGKVIAESE-VRPTLAQLEAILPRFTGPI 119
           ATK++G  M D +K+Y  T+  G  TDT D EG V A +     T A + AI+  + G  
Sbjct: 55  ATKISGHLMADGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSS 114

Query: 120 EQAPPAYSAILIDGQRAYDLARKGEQVEMKTRSVTIHELFLPGTGRGTASRSDGVEGQAP 179
           EQ  P YSA    GQ  Y L+R G +  +KT++V I             S ++ V    P
Sbjct: 115 EQEVPPYSAAKHQGQPLYKLSRAGRETPVKTKTVEI-------------SLAEVVWCDLP 161

Query: 180 LDMTLEGQDRVGVPLHHASHGSPPRAGEELASVTLRAHVSKGTYIRSLARDIALALGTVG 239
                                           V  R   S GTYIRSLA  + + LG   
Sbjct: 162 -------------------------------HVRFRVRCSSGTYIRSLAHSLGIRLGCGA 190

Query: 240 HVTMLRRIKAGPFTLETAISLDKLDEAARGGDIGELMLPLTAGLDDIPALAVSPDEALAL 299
            +T L R  + PF L+ A +LD +   A  G + E ++P+T  L   P + +S  +  ++
Sbjct: 191 VLTELTREYSHPFGLDMAHTLDAV--LAEPGRLAERVIPITHALPHWPKVGISLQQEASV 248

Query: 300 RQG-------KMLMGKPHTGLLLAMLGDT---PVALVESS 329
           R G       +M+   P    + A+L DT   PVALVE++
Sbjct: 249 RNGIPLPYQPEMVADMPFMEGVKAILLDTREVPVALVETA 288