Pairwise Alignments

Query, 249 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 65.9 bits (159), Expect = 7e-16
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 30  REALSDGEFKRELAA-VIPHLRAFGRSLSGNRDTADDLVQETLLKAWAARARFQAG-TNM 87
           R A  D E    L A ++P        + GNR  A+D+ QE +++ W     ++ G   +
Sbjct: 42  RFAAGDPEAAAVLTARLVPRALGVALRVLGNRAEAEDITQEAMVRLWRQAEHWEPGRARL 101

Query: 88  RAWTFIILRNHYLSQMRRSRFRGDWDDLTA-----DRLLAAPAGQDKHVELSDMQRALLQ 142
             W + ++ N  +   R  R RG   DL A     D   +A            +Q AL+Q
Sbjct: 102 STWLYRVVMNLCIDHKR--RLRGGHVDLDAIPDPPDPAKSAAEQMQDGARQDALQDALMQ 159

Query: 143 LPQPQREALILVGAGGFAYEEAAEICGVAVGTIKSRVARGRAALEQIL 190
           LP+ QR+A++L      A  E A I  ++V  ++S  ARG+ AL  IL
Sbjct: 160 LPERQRQAVVLRHIEDLANPEIAGIMDISVEAVESLTARGKRALAAIL 207