Pairwise Alignments

Query, 773 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Sphingobium sp. HT1-2

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  296 bits (759), Expect = 2e-84
 Identities = 177/435 (40%), Positives = 263/435 (60%), Gaps = 47/435 (10%)

Query: 4   FAAALETTLHNALTHASERKHEYATLEHLLLALIDDEHAS--KVMQACGVELGELADAVT 61
           F +  +  + +A + A  R H+Y    HL++AL+D   +    ++    V++ +L   + 
Sbjct: 6   FTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLG 65

Query: 62  QYLDTELDSLKVEGASDPSPTSGFQRVVQRAILHVQSSGKDEVTGANVLVALFSERESYA 121
           + LD                           +  V   G D V  ++ L +LF+  +  A
Sbjct: 66  EMLDR--------------------------LPKVSGIGGD-VQLSSALGSLFNLCDKVA 98

Query: 122 VYFLQQQDMSRLDAVSYISHGVGKGTPTPERQETKGAAEEE-----KKVQDGKGKKD--- 173
               Q++  + + +  Y+   +    P     +  G  E++     +K++ G+   D   
Sbjct: 99  ----QKRQDAYISSEIYLLAAIEDKGPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNA 154

Query: 174 ----SALEQFTVNLNEKAERGKVDPLIGRSSEVDRTIQILCRRSKNNPLYVGDPGVGKTA 229
                ALE+FT++L E+AE+GK+DP+IGR  E+ RTIQ+L RR+KNNP+ +G+PGVGKTA
Sbjct: 155 EELRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTA 214

Query: 230 IAEGLARKIVEGEVPDVLKEAVIYSLDMGALLAGTRYRGDFEERLKAVVTELEKMP-HAV 288
           I EGLA++I+  EVP+ L+   + SLDMGAL+AG +YRG+FEERLK+V+ EL K   + +
Sbjct: 215 IVEGLAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNII 274

Query: 289 LFIDEIHTVIGAGATSGGAMDASNLLKPALSGGTIRCIGSTTYKEFRNHFEKDRALLRRF 348
           LFIDE+HT++GAG    G+MDA N+LKPAL+ G + C+G+TT  E+R + EKD AL RRF
Sbjct: 275 LFIDELHTMVGAG-KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRF 333

Query: 349 QKIDVNEPSVEDTIKILTGLRTAFEEHHHVKYTPDAIKAAVELSARYINDRKLPDKAIDV 408
           QK+ V+EP+VEDTI IL GL+  +E HHHV+ T  AI AA  LS RYI+DR+LPDKAID+
Sbjct: 334 QKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDL 393

Query: 409 IDEVGAMQMLVVPSK 423
           IDE  +   + + SK
Sbjct: 394 IDEAASSIRMQIDSK 408



 Score =  291 bits (746), Expect = 8e-83
 Identities = 165/422 (39%), Positives = 260/422 (61%), Gaps = 25/422 (5%)

Query: 339 EKDRALLRRFQKIDVNEPSVEDTIKILTGLRTAFEEHHHVKYTPDAIKAAVELSARY--- 395
           EK  A+L   +++   E    +  ++    + A     H+K   +  +  +E++ R    
Sbjct: 438 EKRLAILN--EELQEKERDYAELEEVWKAEKAALSGTQHIKAALEQARMDLEVARRAGDL 495

Query: 396 -----INDRKLPD--KAIDVIDEVGAMQMLVVPSKRKKTITPKEIEAVIATMARIPPKTV 448
                +   ++P+  K +D+  +    +M ++ +K    +T  EI  V++    IP   +
Sbjct: 496 NRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNK----VTDAEIAEVLSKQTGIPVSKM 551

Query: 449 SSDDKSVLESLTTDLKRVVFGQDQAIEVLSSAIKLSRAGLRDPDKPIGNYLFSGPTGVGK 508
              +K  L  +   L + V GQ +A+EV+++AI+ SRAGL DP++PIG++LF GPTGVGK
Sbjct: 552 LEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGK 611

Query: 509 TEVARQLATLL---GIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQQPH 565
           TE+ + LA  L      + R DMSE+ME+HSV+RL+GAPPGYVGY++GG LT+AV ++P+
Sbjct: 612 TELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPY 671

Query: 566 SVLLLDEIEKAHPDLFNILLQVMDNGRLTDHHGKTVDFRNTILIMTTNAGASDMAKESIG 625
           SV+LLDE+EKAHPD+FNILLQV+D+GRLTD  G+TVDFRNT++IMT+N G+S + +    
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQE---N 728

Query: 626 FGELTREDVQE---DAVKKLFTPEFRNRLDAIVPFGYLPPEIVARVIDKFVLQLELQLAD 682
           F  L  + ++E   D V K F PEF NR+D  V F  L  E +  +    + +L  +LA+
Sbjct: 729 FARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAE 788

Query: 683 RDVHITLDEDAKAWLTKKGYDKLYGARPMGRLMQEKIKQPLAEELLFGKLVHGGEVHVHM 742
           RD  + +D++A   +   G+D +YGARP+ R +Q+ ++ PLA+ +L GK + G  + + +
Sbjct: 789 RDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSV 848

Query: 743 KD 744
           KD
Sbjct: 849 KD 850