Pairwise Alignments

Query, 1401 a.a., Inner membrane component of TAM transport system from Sphingobium sp. HT1-2

Subject, 1254 a.a., DUF490 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score = 57.8 bits (138), Expect = 7e-12
 Identities = 72/354 (20%), Positives = 142/354 (40%), Gaps = 13/354 (3%)

Query: 988  DTLWRLTGVEIVDIAGPVSVTADAHGTLADPVITGSLATDNAALNSPVTGMRLRNVKARA 1047
            D L  L G E+ +    ++     HG +  P + G +A ++  +   ++ + +++ +   
Sbjct: 844  DFLQPLIG-ELSEAKSNINADVQFHGPMLHPQLNGEIAINDIRVKGEISPVDVQSGQVSL 902

Query: 1048 RFAGAQLVFSSFTANAQNGGSVTGTGNFTFNGIGGVGMDLAFQADNAALLERDDIAATVT 1107
            +F G Q V ++        G +   G+  +  I    +     A +  +     +   V 
Sbjct: 903  KFNGYQAVLNADIQTTD--GLLEVDGDADWQQIEDWRLKARVHAPSMMVELPPMVRVKVI 960

Query: 1108 GPLTIRSDGKGGEIGGDVTLNRSRFTMGRAAAVAQIPELKVIEINRRGEEI-ERPRAAEP 1166
              LT+    +   + G++ L   R  +      A       I +N   E + ++ R    
Sbjct: 961  PDLTLTMQPQLARVTGNIALPWGRIVVEELPPSAIGVSKDQILLNADFEPLTDKERIPFS 1020

Query: 1167 WTMAVKARARNRLTVTGLGLDSEWRADLNIGGTVTNPAIAGRAELVRGNYEFAGRRFELR 1226
                V  +  +   ++  GL       LN+      P I G   +  G Y   G+  +++
Sbjct: 1021 VESDVNVQIGDDFQLSAFGLQGNLVGRLNVAQKDKGPFILGEVNIRNGQYRSFGQDLQIK 1080

Query: 1227 EGRIQFDGKTPVN-PTLDIDAEADVSD----LTATIHVGGTGLKPDISFNSVPSLPQDEL 1281
            EG+I  +G  PV+ P L I A  + ++    + A + V G   +P ++  S P++PQ   
Sbjct: 1081 EGKILMNG--PVDQPYLAITAIRNPNNTQDGVVAGVRVSGPSDEPSLTIFSEPAMPQANA 1138

Query: 1282 LSRILFGTSITNLSAPEALQLASAVGSLQGEGGLDPINAVRKAAGLDRLRIIAA 1335
            LS +L G +I   +   A+       SL   G L  +  + +A G+  L++  A
Sbjct: 1139 LSYLLRGQNIDGEAGGNAMTTTLIGLSLAQSGKL--VGEIGQAFGVQDLQLDTA 1190



 Score = 27.3 bits (59), Expect = 0.010
 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 914  LSRSGLSLSSRPVDVGVNAVLTLDR-----LATR-MVFVAD--GQTIGRGQALLTPLIST 965
            +S S L LS   +D  +NA  TL +     L  R  V +AD  GQT+         L + 
Sbjct: 257  VSISSLELSMPELDAQLNAQATLSQDYPIQLELRSQVHLADFKGQTLS--------LAAQ 308

Query: 966  GSLVERLNGAPL--IAQLRFNG-----TADTLWRLTGVEIVDIAGPVSVTADAHGTLADP 1018
            GSL +    A L  +AQ + N       AD  + L  +  V    P+    D H  + + 
Sbjct: 309  GSLADLTVQANLDSLAQAQLNSHFNLLDADIPFDLQ-LSQVKAQWPMLGEGDYHVEVPEL 367

Query: 1019 VITGSLATDNAALNSPVTGMRLRNVKARARFAG--AQLVFSSFTANAQNGGSVTG 1071
             I GSLA    AL   + G  L NV    +  G   ++   S   +   GG VTG
Sbjct: 368  SIQGSLAKYQFALQGALQGKDLPNVSLALQGHGNLDEVALQSLKVDTL-GGLVTG 421