Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (554), Expect = 5e-61
 Identities = 116/280 (41%), Positives = 180/280 (64%), Gaps = 12/280 (4%)

Query: 397 AAEGRAVERIRNEVSEIAQ---ATGMSLSEF--------RRIVNMVQKGEREARIAKKEM 445
           A EG A E +R E    A+   AT M LSE            V   ++  R    A+K M
Sbjct: 37  AVEG-ASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRM 95

Query: 446 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 505
           +E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I
Sbjct: 96  IESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 155

Query: 506 TRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMK 565
            R++ +Q RTIR+P+H+++ +N  +RT+R+       EPTPEE+A  L  P++ V K+++
Sbjct: 156 ERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLR 215

Query: 566 IAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVL 625
           + +   S++TPIG + D  L D + D +   P  +    +++E++   L  L P+++ VL
Sbjct: 216 LNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVL 275

Query: 626 RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 665
             RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 276 ARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 75  NIVENEEASEDGDEQREREEAD---DADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLR 131
           N V   E  +  DE  E  E D    +D++    +G      ++ +   ++ D  +MYL 
Sbjct: 5   NTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLS 64

Query: 132 EMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD 191
           E+G   LL+ E E+  A+R   G +     + ES      +++ S   +N  + L ++++
Sbjct: 65  EIGFSPLLTAEEEVLYARRALRGDEAARKRMIES--NLRLVVKISRRYSNRGLALLDLIE 122