Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  551 bits (1421), Expect = e-161
 Identities = 317/658 (48%), Positives = 425/658 (64%), Gaps = 43/658 (6%)

Query: 27  EASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDG 86
           ++ +K+L+ R K++GY+TY E+ND LP + + SEQ+EDI+  +N+MG+ +VE    + D 
Sbjct: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVET---APDA 62

Query: 87  DEQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIA 146
           D+    ++    D+D+++     L + + +  + RT DPVRMY+REMG VELL+REGEI 
Sbjct: 63  DDLALSDDTTITDEDAAEAAAAALSSVESE--IGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 147 IAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD--LDAMLSKDPAPEN 204
           IAKRIE G + +   + E P T   I+E    +   E++L +++   +D    +  AP  
Sbjct: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180

Query: 205 MEEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQ 264
              G+E  + ++++             E+++   DEDED        EDE+ D   S ++
Sbjct: 181 THIGSELSEADLAD-------------EDDAVVEDEDED--------EDEDGDGESSDSE 219

Query: 265 MEETLKP-MALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEV 323
            E  + P +A EKF  +        K Q  ++     G    Q +E S       L  ++
Sbjct: 220 EEVGIDPELAREKFNELR------GKFQNLQLAVNEFGRDSHQASEAS------DLVLDI 267

Query: 324 -ESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLR-LAERHKVSRKDFLERYMGHELDDAW 381
               +   ++ ++LV+ L     R+      +++ + E  K+ +K F+  + G+E ++ W
Sbjct: 268 FREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEW 327

Query: 382 LEKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIA 441
           L+KV   DK + A    +   + R   ++  I Q T +S+   + I   +  GE +AR A
Sbjct: 328 LDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRA 387

Query: 442 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 501
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447

Query: 502 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR 561
           RQAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREP PEE+AER+ MP +K+R
Sbjct: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507

Query: 562 KVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPRE 621
           KV+KIAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +LK     VLA LTPRE
Sbjct: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567

Query: 622 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 679
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD+
Sbjct: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE 625