Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 320 a.a., RNA polymerase sigma factor SigD from Synechococcus elongatus PCC 7942

 Score =  216 bits (550), Expect = 1e-60
 Identities = 108/254 (42%), Positives = 171/254 (67%), Gaps = 8/254 (3%)

Query: 412 EIAQATGMSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 471
           E A A G+S+ E R+  ++   GE+    AK++M+EANLRLV+S+AKKY  R +  LDLI
Sbjct: 63  EWAAAAGLSIEELRQQQHL---GEQ----AKRKMIEANLRLVVSVAKKYLKRNMDLLDLI 115

Query: 472 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 531
           QEG IG+ + V+KF+  +GY+FSTYA WWIRQAITR+IA++ARTIR+P+H+ E +NK+ +
Sbjct: 116 QEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKK 175

Query: 532 TSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIED 591
             RQ   + GR  T  E+A  L +   +VR  ++ A+ P+SL+  +GD +D+ LGD +E 
Sbjct: 176 MQRQLSQQLGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLLE- 234

Query: 592 KNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 651
            +   P +  +QA+++  + R+L  LT ++ +V+ +R+G+      TL  +G +  ++RE
Sbjct: 235 TDCTTPEEFTLQASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRE 294

Query: 652 RIRQIEAKALRKLK 665
           R+RQ+E +AL  L+
Sbjct: 295 RVRQLEREALHTLR 308



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 117 ETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIE 152
           +T   T D VR YLRE+G V LL+ E E+ + KR++
Sbjct: 3   KTETPTSDLVRTYLREIGRVPLLTHEEEVVLGKRVQ 38