Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  806 bits (2082), Expect = 0.0
 Identities = 433/689 (62%), Positives = 518/689 (75%), Gaps = 17/689 (2%)

Query: 1   MATKANSKNGGMGDGEDG-DAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSS 59
           MATK         + E   D PLLDL++ +VKK+I  AKKRGY+T DELN  LP ++++S
Sbjct: 1   MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 60  EQIEDIMSALNEMGVNIVENEEASEDG--DEQREREEADDADDDSSDDDGPKLVTEKKKE 117
           EQIED MS L++MG+N++E+EEA E    D+    +E +    + +   G  L   KKKE
Sbjct: 61  EQIEDTMSMLSDMGINVIEDEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKKKE 120

Query: 118 TVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWST 177
             DRTDDPVRMYLREMG+VELLSREGEIAIAKRIEAGR+TMI GLCESP TF A+I W  
Sbjct: 121 PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRD 180

Query: 178 ALNNGEMQLREILDLDAMLSKDPAPENMEEGAEDDDGEISEKTAGPSFKEEEEPEEESAD 237
            LN G+  LREI+DL+   S  P  +   +    +  E   K A     EE+E    +  
Sbjct: 181 ELNEGQTLLREIIDLETTYS-GPEAKAAPQFQSPEKIEADRKAA-----EEKEKVRRTRT 234

Query: 238 GDEDED-----GAPRARREEDEEEDNT-LSLAQMEETLKPMALEKFATITEIFRAFSKAQ 291
              D+D     G  +A  EE+E++D + LSLA ME  L+P  +E    I E ++   K Q
Sbjct: 235 AANDDDITNVGGEGQAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQ 294

Query: 292 ESRMVA-MANGESLSQKAEDSYHELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTAL 350
           + ++ A +A   +LS   E  Y EL+++L   V+S+  +Q +I+ LV+QLY  ++RLT  
Sbjct: 295 DQQVEARLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQN 354

Query: 351 GGQMLRLAERHKVSRKDFLERYMGHELDDAWLEKVQGL-DKKWAAFAAAEGRAVERIRNE 409
            G++LRLAE + V R+ FLE+Y G ELD  W++ +  L  K W  FA AE + +  IR E
Sbjct: 355 EGRLLRLAESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQE 414

Query: 410 VSEIAQATGMSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLD 469
           +  +A  TG+S++EFRRIV+MVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLD
Sbjct: 415 IQNLATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLD 474

Query: 470 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 529
           LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+
Sbjct: 475 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKI 534

Query: 530 VRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFI 589
           VRTSRQ LHE GREPTPEE+AE+L+MPLEKVRKV+KIAKEPISLETP+GDEEDSHLGDFI
Sbjct: 535 VRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFI 594

Query: 590 EDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVT 649
           EDKNA++P+DAAIQANL+ET TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVT
Sbjct: 595 EDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVT 654

Query: 650 RERIRQIEAKALRKLKHPSRSRKMRSFLD 678
           RERIRQIEAKALRKLKHPSRSRK+RSFLD
Sbjct: 655 RERIRQIEAKALRKLKHPSRSRKLRSFLD 683