Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  106 bits (265), Expect = 1e-27
 Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 20/255 (7%)

Query: 423 EFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 482
           EF     +  +G+R+A      +V ++LRLV  IA  Y + GL   DL+ EGN+GLMKAV
Sbjct: 35  EFMLAKRLQDEGDRDAA---HRLVTSHLRLVAKIAMGYRHYGLPVSDLVAEGNMGLMKAV 91

Query: 483 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQF-----L 537
            KFE  RG++ +TYA WWI+ +I   I +    ++  V  +    KL    R+      +
Sbjct: 92  KKFEADRGFRLATYAMWWIKASINEYILNSWSLVK--VGTVAAQKKLFFNLRRLKAKLGV 149

Query: 538 HEQGREPTPEE---MAERLSM-PLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDK- 592
           +E+G + +PE+   +A +L +   + V    ++A    SL  P+G+++     D + D+ 
Sbjct: 150 YEEG-DLSPEDVKTIATQLKVTEADVVMMNRRLAGPDASLNVPVGEDQSMDRMDLLMDEG 208

Query: 593 -NAIIPVDAAIQANLKETVTR-VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR 650
            N      A  + +L   + +  L++LT RE  ++  R     +   TLEE+G ++ V+R
Sbjct: 209 DNQEEVYAAHEEQSLGNRLLKDALSTLTERERHIITAR--RLRSEPVTLEELGGEYGVSR 266

Query: 651 ERIRQIEAKALRKLK 665
           ER+RQIE +A  KL+
Sbjct: 267 ERVRQIENRAFEKLQ 281