Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Enterobacter sp. TBS_079

 Score =  211 bits (537), Expect = 4e-59
 Identities = 96/225 (42%), Positives = 160/225 (71%)

Query: 441 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 500
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149

Query: 501 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKV 560
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R+  H+   EP+ EE+AE+L  P++ V
Sbjct: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209

Query: 561 RKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPR 620
            +++++ +   S++TP+G + +  L D + D+    P D     ++K+++ + L  L  +
Sbjct: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDDDMKQSIVKWLFELNAK 269

Query: 621 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 665
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314



 Score = 31.6 bits (70), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 72  MGVNIVENEEASEDGDEQREREEADD----ADDDSSDDDGPKLVTEK--KKETVDRTDDP 125
           M  N ++  + +ED +      EA D     +++ SD+D   L  E+   +    R  D 
Sbjct: 1   MSQNTLKVHDLNEDAEFDENGAEAFDEKALVEEEPSDND---LAEEELLSQGATQRVLDA 57

Query: 126 VRMYLREMGAVELLSREGEIAIAKRIEAG 154
            ++YL E+G   LL+ E E+  A+R   G
Sbjct: 58  TQLYLGEIGYSPLLTAEEEVYFARRALRG 86